ViewGene
Locus Name:
GeneID:
Location:

GeneID:4503
TrivialName: PA14_39220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39220
PAO1 Ortholog Locus:PA1956
Sequence Length:492
Protein Length:163
Start: 3492721
Stop: 3493212
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05344.1|AE004622_6 (AE004622) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/163 (96%), Positives = 159/163 (97%), Gaps = 1/163 (0%)
Sequence:
ATGTCGGGGAGTTCGCTACGCATCGTCGTTCCAGCGCTGCTGGTCATCGTCGGCTCCGTGCCGGCGAACCTC
CCGCCCGCGCATGCGGCGGACGGCACGATCGTCGTCCAGCGCCAGGTCCAGCCACGGGTCGCCTACCGTCCG
AGCATGGTGCCCGACCCACATCCCACCGTCGTCGACACCAACGTCTCCGCCGAGGTCAACGCCCTCGCCAAC
GGGGCTGCCAGCGGCAATACCGTGAGCCGCGAACTGGGCGATGCCGACTTCGCCATCGTGACCAGCGGTTCC
GGGATTCGCAGCATGATTCTCCCCGGCGGCGCCCTGCCGGGTTTCGCCAACCAGCCGGCGAACCCGGCGACG
GTCCAGGCCGTCGGCAACCTCGGCACCACCCACGGCGCGGGAGGCGGCGCCGGCGCCGGCCTCGCCGGGCAG
ATCAACGGCAGCCTCAAGCAGGGCCTGGCGCCGCTGCAGATGCTCGGGGGTGGTCAATGA
Translation:
MSGSSLRIVVPALLVIVGSVPANLPPAHAADGTIVVQRQVQPRVAYRPSMVPDPHPTVVDTNVSAEVNALAN
GAASGNTVSRELGDADFAIVTSGSGIRSMILPGGALPGFANQPANPATVQAVGNLGTTHGAGGGAGAGLAGQ
INGSLKQGLAPLQMLGGGQ*
AnnotationID:4509GeneID:4503
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1956
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9007




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26149




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4503
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6856
                           PA1956_tr
                           translation of PA1956
                           163
                           96.31
                           97.54
                           1
                           776.0
     

     
     
183273
                           gb|AAG05344.1|AE004622_6
                           (AE004622) hypothetical protein PA1956 [Pseudomonas aeruginosa PAO1]
                           163
                           96.31
                           97.54
                           1
                           776.0
     

     






      

          
GC ORFID: 47505How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1956Glimmer Score: 

          
Start: 1461190Stop: 1460699

          
Length: 492


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1956 translation of PA1956Homolog Bit Score 302.0

          
Other Homologs:  t_PA1956 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGGGGAGTTCGCTACGCATCGTCGTTCCAGCGCTGCTGGTCATCGTCGGCTCCGTGCCGGCGAACCTC 
CCGCCCGCGCATGCGGCGGACGGCACGATCGTCGTCCAGCGCCAGGTCCAGCCACGGGTCGCCTACCGTCCG 
AGCATGGTGCCCGACCCACATCCCACCGTCGTCGACACCAACGTCTCCGCCGAGGTCAACGCCCTCGCCAAC 
GGGGCTGCCAGCGGCAATACCGTGAGCCGCGAACTGGGCGATGCCGACTTCGCCATCGTGACCAGCGGTTCC 
GGGATTCGCAGCATGATTCTCCCCGGCGGCGCCCTGCCGGGTTTCGCCAACCAGCCGGCGAACCCGGCGACG 
GTCCAGGCCGTCGGCAACCTCGGCACCACCCACGGCGCGGGAGGCGGCGCCGGCGCCGGCCTCGCCGGGCAG 
ATCAACGGCAGCCTCAAGCAGGGCCTGGCGCCGCTGCAGATGCTCGGGGGTGGTCAATGA