ViewGene
Locus Name:
GeneID:
Location:

GeneID:4502
TrivialName: PA14_68110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68110
PAO1 Ortholog Locus:PA5157
Sequence Length:471
Protein Length:156
Start: 6077376
Stop: 6077846
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08542.1|AE004928_8 (AE004928) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 156/156 (100%), Positives = 156/156 (100%)
Sequence:
ATGGGTCACTACAGCGCCTCCGACTTTCCCTTCAAGGGCTCCATTGGCCAGCTCATCGGCGTCAGTGCCGCG
ACCAAGGACCGCATCCTCGAGAAGCACCTCGCCGCGCTGGACATAACCGCCGCCCAGTTCAAGGTGCTGATC
TTCGTCGGTCTCAACCGTGCCAACAGTCCGGTCGAACTGTGTCGCGAGCTGTCGGTGGACAGCGGCTCGATG
ACTCGCATGCTGGCGCGCCTGGAGAAAAAAGGGCTGCTGCTGCGCGGCCGCTGTCCCGAAGACCGCCGTTGC
CTGCGCCTGGATCTCAGCGAAGCGGGACGGAAGGTCCAGGAGCAGCTTCCGCTGATCGCCTCGGCGGCGATG
AACGAGCTGGTCGCCTGCCTGAGCACGGAAGAATTGCAGACGCTGACCCATCTGCTGACCAAGGTTCTGCTA
CACGCCGGCTGCCCTAGGGCCAGCCTGCAGGAGTCCTGA
Translation:
MGHYSASDFPFKGSIGQLIGVSAATKDRILEKHLAALDITAAQFKVLIFVGLNRANSPVELCRELSVDSGSM
TRMLARLEKKGLLLRGRCPEDRRCLRLDLSEAGRKVQEQLPLIASAAMNELVACLSTEELQTLTHLLTKVLL
HAGCPRASLQES*
AnnotationID:4508GeneID:4502
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 14:02:57
Gene Name:
Confidence Code:3
GeneProduct:putative multiple antibiotic resistance protein MarR
Cell Localization:()
Synonyms:PA5157
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:putative transcriptional regulator
Functional Category Confidence Code:5
COGs:smart00347,pfam01047,COG1846
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69151.1|AE016548_10 (AE016787) transcriptional regulator EmrR, putative [Pseudomonas
           putida KT2440]
          Length = 157

 Score =  144 bits (363), Expect = 2e-34
 Identities = 80/149 (53%), Positives = 105/149 (70%), Gaps = 1/149 (0%)

>gb|AAO57218.1| (AE016869) multiple antibiotic resistance protein MarR, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 162

 Score =  138 bits (348), Expect = 1e-32
 Identities = 76/146 (52%), Positives = 102/146 (69%), Gaps = 1/146 (0%)








 
Structural Features:
smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
CD-Length = 101 residues, 100.0% aligned
Score = 81.4 bits (201), Expect = 5e-17
Identities = 41/101 (40%), Positives = 57/101 (56

pfam01047, MarR, MarR family. 
CD-Length = 104 residues, 100.0% aligned
Score = 80.6 bits (199), Expect = 8e-17
Identities = 46/104 (44%), Positives = 67/104 (64%)

COG1846, MarR, Transcriptional regulators [Transcription]
CD-Length = 126 residues,  98.4% aligned
Score = 68.8 bits (167), Expect = 3e-13
Identities = 44/124 (35%), Positives = 66/124 (53%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9005




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26147




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34882




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4502_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4502
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6855
                           PA5157_tr
                           translation of PA5157
                           156
                           99.99
                           99.99
                           0
                           777.0
     

     
     
183270
                           gb|AAG08542.1|AE004928_8
                           (AE004928) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           156
                           99.99
                           99.99
                           0
                           777.0
     

     
     
183271
                           gb|AAN69151.1|AE016548_10
                           (AE016787) transcriptional regulator EmrR, putative [Pseudomonas putida KT2440]
                           158
                           50.63
                           67.08
                           3
                           357.0
     

     
     
183272
                           gb|AAO57218.1|
                           (AE016869) multiple antibiotic resistance protein MarR, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           163
                           47.85
                           63.80
                           8
                           345.0
     

     






      

          
GC ORFID: 47504How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5157Glimmer Score: 

          
Start: 5341062Stop: 5341532

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5157 translation of PA5157Homolog Bit Score 303.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene757 (ORF: BLASTX 136.0), t_PA5157 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTCACTACAGCGCCTCCGACTTTCCCTTCAAGGGCTCCATTGGCCAGCTCATCGGCGTCAGTGCCGCG 
ACCAAGGACCGCATCCTCGAGAAGCACCTCGCCGCGCTGGACATAACCGCCGCCCAGTTCAAGGTGCTGATC 
TTCGTCGGTCTCAACCGTGCCAACAGTCCGGTCGAACTGTGTCGCGAGCTGTCGGTGGACAGCGGCTCGATG 
ACTCGCATGCTGGCGCGCCTGGAGAAAAAAGGGCTGCTGCTGCGCGGCCGCTGTCCCGAAGACCGCCGTTGC 
CTGCGCCTGGATCTCAGCGAAGCGGGACGGAAGGTCCAGGAGCAGCTTCCGCTGATCGCCTCGGCGGCGATG 
AACGAGCTGGTCGCCTGCCTGAGCACGGAAGAATTGCAGACGCTGACCCATCTGCTGACCAAGGTTCTGCTA 
CACGCCGGCTGCCCTAGGGCCAGCCTGCAGGAGTCCTGA