ViewGene
Locus Name:
GeneID:
Location:

GeneID:4501
TrivialName: PA14_63650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63650
PAO1 Ortholog Locus:PA4815
Sequence Length:450
Protein Length:149
Start: 5676199
Stop: 5676648
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08200.1|AE004894_6 (AE004894) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 148/149 (99%), Positives = 149/149 (100%)
Sequence:
ATGCCCACTCCCCCCTGGTGGCTGTTCGTCCTGCCCCTGCTCGCCGGCGCCTGCCTGCCGCTGCAGGCGGGG
ATCAACGGCCAGTTGGCCAAGCAGGTGTCCAGCGTCCTCGCCGCGGCACTGATCTCGTTCTTCGTCGGCACC
CTCGGGTTGCTCGCCCTGACCCTCTCGCAGCGCGAGTTTCCCGGCCTGGCGGCATTGCGCGGGCTGAGCTGG
TGGCACTGGTGCGGCGGTTTCCTCGGCATGTTCTTCATCTTCATCGCCGCCTTCGCCGCGCCGCGCATCGGC
GCGCTGATGTTCATGGTGCTGGTGCTCGCCGGCCAGTTGGGCATGGCCGTGAGCCTCGACCACTTCGGTTGG
GCCGGCTTCCGCGAGGCACCGATCAGCGCGCTGAAACTGGGCGGGTTGGCACTGATCGGCGCCGGCATCTGG
ATGATCCGCAAGGGCTGA
Translation:
MPTPPWWLFVLPLLAGACLPLQAGINGQLAKQVSSVLAAALISFFVGTLGLLALTLSQREFPGLAALRGLSW
WHWCGGFLGMFFIFIAAFAAPRIGALMFMVLVLAGQLGMAVSLDHFGWAGFREAPISALKLGGLALIGAGIW
MIRKG*
AnnotationID:4507GeneID:4501
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4815
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9003




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26145




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35228




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4501_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4501
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6854
                           PA4815_tr
                           translation of PA4815
                           149
                           99.32
                           99.99
                           0
                           776.0
     

     
     
183269
                           gb|AAG08200.1|AE004894_6
                           (AE004894) hypothetical protein PA4815 [Pseudomonas aeruginosa PAO1]
                           149
                           99.32
                           99.99
                           0
                           776.0
     

     






      

          
GC ORFID: 47503How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4815Glimmer Score: 

          
Start: 4939879Stop: 4940328

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4815 translation of PA4815Homolog Bit Score 303.0

          
Other Homologs:  t_PA4815 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCACTCCCCCCTGGTGGCTGTTCGTCCTGCCCCTGCTCGCCGGCGCCTGCCTGCCGCTGCAGGCGGGG 
ATCAACGGCCAGTTGGCCAAGCAGGTGTCCAGCGTCCTCGCCGCGGCACTGATCTCGTTCTTCGTCGGCACC 
CTCGGGTTGCTCGCCCTGACCCTCTCGCAGCGCGAGTTTCCCGGCCTGGCGGCATTGCGCGGGCTGAGCTGG 
TGGCACTGGTGCGGCGGTTTCCTCGGCATGTTCTTCATCTTCATCGCCGCCTTCGCCGCGCCGCGCATCGGC 
GCGCTGATGTTCATGGTGCTGGTGCTCGCCGGCCAGTTGGGCATGGCCGTGAGCCTCGACCACTTCGGTTGG 
GCCGGCTTCCGCGAGGCACCGATCAGCGCGCTGAAACTGGGCGGGTTGGCACTGATCGGCGCCGGCATCTGG 
ATGATCCGCAAGGGCTGA