ViewGene
Locus Name:
GeneID:
Location:

GeneID:4500
TrivialName: PA14_62170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62170
PAO1 Ortholog Locus:PA4697
Sequence Length:453
Protein Length:150
Start: 5548215
Stop: 5548667
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08083.1|AE004884_1 (AE004884) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 150/150 (100%), Positives = 150/150 (100%)
Sequence:
ATGCGACGCATGATCCTCCCGGCCAGCTTGTTGCTCGCCCTCTCCTCTTTCGCCATGGCCGCCCCGATCTAC
AAATGGGTCGACGCCGAGGGCGTCACCCACTTCGGCGCACAACCGCCGCAAGGTGCGCAAGCGACCACGGTG
AATACCCAGACCGCCCCGCCGCCGGACAACTTCCCCCTGCCACCCTCGACCCCGGCACCGACCATCCAGCAG
AAACCGGCCGATCCCGAGCAGAAGGCGATCGACGACAAGGTGAAGCAGCAAGTGGCGAAGGAAGAGGCCGAG
CGCAAGCAGTTCTGCGAAGAGACCCGCAACAACCTCGCGCAACTGAAGAACAACCCGCGCGTAAGGGTCGAC
GAAGGCAAGGGCGAACTCCGTCGCCTCGGCGAGGAAGAACGCCAGGAGCGAATCGCCAAGGCCGAAAAGGCG
ATCCAGGAGAATTGCCGCTGA
Translation:
MRRMILPASLLLALSSFAMAAPIYKWVDAEGVTHFGAQPPQGAQATTVNTQTAPPPDNFPLPPSTPAPTIQQ
KPADPEQKAIDDKVKQQVAKEEAERKQFCEETRNNLAQLKNNPRVRVDEGKGELRRLGEEERQERIAKAEKA
IQENCR*
AnnotationID:4506GeneID:4500
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 21:09:00
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4697
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9001




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26143




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4500
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6853
                           PA4697_tr
                           translation of PA4697
                           150
                           99.99
                           99.99
                           0
                           776.0
     

     
     
183267
                           gb|AAG08083.1|AE004884_1
                           (AE004884) hypothetical protein PA4697 [Pseudomonas aeruginosa PAO1]
                           150
                           99.99
                           99.99
                           0
                           776.0
     

     
     
183268
                           gb|AAO54514.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           159
                           48.42
                           58.49
                           21
                           340.0
     

     






      

          
GC ORFID: 47502How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4697Glimmer Score: 

          
Start: 4811895Stop: 4812347

          
Length: 453


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4697 translation of PA4697Homolog Bit Score 303.0

          
Other Homologs:  psyr_15may02_Scaffold19_revised_gene2868 (ORF: BLASTX 129.0), t_PA4697 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGACGCATGATCCTCCCGGCCAGCTTGTTGCTCGCCCTCTCCTCTTTCGCCATGGCCGCCCCGATCTAC 
AAATGGGTCGACGCCGAGGGCGTCACCCACTTCGGCGCACAACCGCCGCAAGGTGCGCAAGCGACCACGGTG 
AATACCCAGACCGCCCCGCCGCCGGACAACTTCCCCCTGCCACCCTCGACCCCGGCACCGACCATCCAGCAG 
AAACCGGCCGATCCCGAGCAGAAGGCGATCGACGACAAGGTGAAGCAGCAAGTGGCGAAGGAAGAGGCCGAG 
CGCAAGCAGTTCTGCGAAGAGACCCGCAACAACCTCGCGCAACTGAAGAACAACCCGCGCGTAAGGGTCGAC 
GAAGGCAAGGGCGAACTCCGTCGCCTCGGCGAGGAAGAACGCCAGGAGCGAATCGCCAAGGCCGAAAAGGCG 
ATCCAGGAGAATTGCCGCTGA