ViewGene
Locus Name:
GeneID:
Location:

GeneID:450
TrivialName: PA14_37880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37880
PAO1 Ortholog Locus:PA2058
Sequence Length:1809
Protein Length:602
Start: 3380381
Stop: 3378573
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05446.1|AE004632_5 (AE004632) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 596/602 (99%), Positives = 599/602 (99%)
Sequence:
ATGCCCGGACGCATCCTGGTCTTCGCCTGCTGCCTGCTCGCCAGCCTGGCCCGCAGCGAGCCGCGCCATGCC
ATCACGCTCTACGACGAGCCGGCGAAATACCCGCCGGGTTTCCAGCACTTCGACTTCGTCGACCCGCAGGCG
CCCAAGGGCGGCAGCCTGCGGCGGATGGAAAGCGGCAGCTTCGACACGCTGAACCCCTTCGCCAACCGCGGC
ACGCCGATCAGCATGACCCAGGCCGCGCTGATCTACGAAACCCTAGGCTTCCAGTCGCTGGACGAGCCGTTC
ACCGAATACGGCTACCTGGCGCGCTACATCGAGAAAGCCCCGGACAACAGCTGGGTGCGTTTCCATATTGAT
CCGCGGGCGCGCTTCAGCGACGGCGTGGCGGTCACCGCCGAGGACGTGAAGTTTTCCTTCGACAGCCTGGTC
GAGCAGGGCAGCCCGTTCTGGCGCGCCTACTACAAGGAGGTCCTCGAGCCGGTGGTGGAGGACCGCCTGCGC
ATCCGCTTCGACTTCCGTCATGCCGGCAACCGCGAACTGCCGCTGGTGCTGGCCCAGCTCTACGTGCTGCCC
AGGCATTGGTGGCAGGGACGCGACTTCAACCGCAGCAGCATGCAGCCGCCGCTGGGCAGCGGACCTTACCGG
CTGGAGAAGGCCGAGGCGGGGCGTTCGGTGAGCTACCGGCGCAACCCCGACTGGTGGGCTCGCGACCTGCCG
GTCGGGCGTGGCCTGTACAACTTCGAGCGGATCCGTTTCGACTACTACCGCGACAGCGGCGTGGCCTTGCAG
GCGTTCAAGGCCGGGCAGGCCGACATCAATGTCGAGACCAGCGTCAAGGCCTGGAGCAGCGGCTACGACTCG
CCGGCCCTGCGCGATGGCCGGTTGCGCCAGGAGAGCTTTCCCTACCCGTACCCGGCCAGCCTCCAGGGCCTG
GTGTTCAACCTGCGCCGGCCGCTGTTCGAGGACCGCCGGGTACGCCAGGCGCTGAGCCTGCTGTTCGACTTC
GAATGGACCAACCGGCAGCTCTTCGGCGGTCGCTACAAGCGCCTGCGCAGCTATTTCGACAACTCGGAGATG
GCCGCTCGCGGCCTGCCCGGCGCCGACGAACTGGCCTTGCTGGAGCCGCTGCGTGGGCAGATCCCCGAGGAG
GTCTTCGGCCAGGCCTACGCTCCGCCGGTGAACGACGGCAGCGGCGATATCCATGAGCGCCTGGTGCAGGCC
TACCGCCTGCTCGGCGAGGCCGGCTGGCATGCCGTCGAAGGACGCCTGCTGGATACCGCCGGACGGCCGCTG
CGCTTCGAACTCCTGCTCCAGGGCAAGGGCCTGGAGCGCGCGCTGCTGCCGTTCCAGCGCAACCTGGCGCGG
ATCGGCATCGATATGCGCCTGCGCCAGGTGGACGCTTCGCAATACATCGAGCGCATACGTGCGCGGGACTAC
GACATGATCGTTTCGAGCTTCTCCCAGTCCAATTCGCCGGGCAACGAGCAGTACAGCTTCTGGCATTCCTCC
AGCTACGCCGATCCCGGCGGCTACAACCGCATCGGCCTGAAGGACCCGGCCATCGACCGGCTGGTGCAGGCG
GTGGTCGAGGCCGACTCGCGGGCCGCCCTGGAAACCGCCGTGCGCGCCCTCGACCGGGTGCTGCAATGGGGC
TACTACCTGATCCCGACCTGGTATTCCGACGAGGTCTGGATCGCCAGCTGGAATCGCTTCGGCCGACCGCCG
CAGGCGCCGCGCTACAGCCTGGGGCTGAACACCTGGTGGGAAGTCCGCGAGCGGGCCGTGCCGAGCCGGCAG
GCGCAGTGA
Translation:
MPGRILVFACCLLASLARSEPRHAITLYDEPAKYPPGFQHFDFVDPQAPKGGSLRRMESGSFDTLNPFANRG
TPISMTQAALIYETLGFQSLDEPFTEYGYLARYIEKAPDNSWVRFHIDPRARFSDGVAVTAEDVKFSFDSLV
EQGSPFWRAYYKEVLEPVVEDRLRIRFDFRHAGNRELPLVLAQLYVLPRHWWQGRDFNRSSMQPPLGSGPYR
LEKAEAGRSVSYRRNPDWWARDLPVGRGLYNFERIRFDYYRDSGVALQAFKAGQADINVETSVKAWSSGYDS
PALRDGRLRQESFPYPYPASLQGLVFNLRRPLFEDRRVRQALSLLFDFEWTNRQLFGGRYKRLRSYFDNSEM
AARGLPGADELALLEPLRGQIPEEVFGQAYAPPVNDGSGDIHERLVQAYRLLGEAGWHAVEGRLLDTAGRPL
RFELLLQGKGLERALLPFQRNLARIGIDMRLRQVDASQYIERIRARDYDMIVSSFSQSNSPGNEQYSFWHSS
SYADPGGYNRIGLKDPAIDRLVQAVVEADSRAALETAVRALDRVLQWGYYLIPTWYSDEVWIASWNRFGRPP
QAPRYSLGLNTWWEVRERAVPSRQAQ*
AnnotationID:459GeneID:450
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:17
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:PA2058
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:peptide ABC transporter, periplamic peptide-binding protein
Functional Category Confidence Code:5
COGs: COG4166
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69729.1|AE016609_3 (AE016789) peptide ABC transporter, periplamic peptide-binding
           protein [Pseudomonas putida KT2440]
          Length = 611

 Score =  688 bits (1775), Expect = 0.0
 Identities = 323/584 (55%), Positives = 428/584 (73%), Gaps = 4/584 (0%)

>gb|AAF96493.1| (AE004389) peptide ABC transporter, periplasmic peptide-binding
           protein, putative [Vibrio cholerae]
          Length = 611

 Score =  467 bits (1201), Expect = e-130
 Identities = 234/566 (41%), Positives = 340/566 (60%), Gaps = 6/566 (1%)






 
Structural Features:
COG4166, OppA, ABC-type oligopeptide transport system, periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 562 residues,  97.0% aligned
Score =  370 bits (951), Expect = 2e-103
Identities = 179/597 (29%), Positives = 264/597 (44%), Gaps = 63/597 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:903




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18045




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32646




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:450_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:450
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
769
                           PA2058_tr
                           translation of PA2058
                           602
                           99.00
                           99.50
                           0
                           3174.0
     

     
     
33811
                           gb|AAG05446.1|AE004632_5
                           (AE004632) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           602
                           99.00
                           99.50
                           0
                           3174.0
     

     
     
770
                           PA1810_tr
                           translation of PA1810
                           624
                           55.76
                           71.95
                           31
                           1885.0
     

     
     
33812
                           gb|AAG05199.1|AE004607_5
                           (AE004607) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           624
                           55.76
                           71.95
                           31
                           1885.0
     

     
     
33813
                           gb|AAN69729.1|AE016609_3
                           (AE016789) peptide ABC transporter, periplamic peptide-binding protein [Pseudomonas putida KT2440]
                           618
                           53.07
                           70.71
                           23
                           1773.0
     

     






      

          
GC ORFID: 43452How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2058Glimmer Score: 

          
Start: 1573532Stop: 1575340

          
Length: 1809


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2058 translation of PA2058Homolog Bit Score 1227.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene635 (ORF: BLASTX 667.0), t_PA1811 (ORF: BLASTX 494.0), t_PA2058 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGGACGCATCCTGGTCTTCGCCTGCTGCCTGCTCGCCAGCCTGGCCCGCAGCGAGCCGCGCCATGCC 
ATCACGCTCTACGACGAGCCGGCGAAATACCCGCCGGGTTTCCAGCACTTCGACTTCGTCGACCCGCAGGCG 
CCCAAGGGCGGCAGCCTGCGGCGGATGGAAAGCGGCAGCTTCGACACGCTGAACCCCTTCGCCAACCGCGGC 
ACGCCGATCAGCATGACCCAGGCCGCGCTGATCTACGAAACCCTAGGCTTCCAGTCGCTGGACGAGCCGTTC 
ACCGAATACGGCTACCTGGCGCGCTACATCGAGAAAGCCCCGGACAACAGCTGGGTGCGTTTCCATATTGAT 
CCGCGGGCGCGCTTCAGCGACGGCGTGGCGGTCACCGCCGAGGACGTGAAGTTTTCCTTCGACAGCCTGGTC 
GAGCAGGGCAGCCCGTTCTGGCGCGCCTACTACAAGGAGGTCCTCGAGCCGGTGGTGGAGGACCGCCTGCGC 
ATCCGCTTCGACTTCCGTCATGCCGGCAACCGCGAACTGCCGCTGGTGCTGGCCCAGCTCTACGTGCTGCCC 
AGGCATTGGTGGCAGGGACGCGACTTCAACCGCAGCAGCATGCAGCCGCCGCTGGGCAGCGGACCTTACCGG 
CTGGAGAAGGCCGAGGCGGGGCGTTCGGTGAGCTACCGGCGCAACCCCGACTGGTGGGCTCGCGACCTGCCG 
GTCGGGCGTGGCCTGTACAACTTCGAGCGGATCCGTTTCGACTACTACCGCGACAGCGGCGTGGCCTTGCAG 
GCGTTCAAGGCCGGGCAGGCCGACATCAATGTCGAGACCAGCGTCAAGGCCTGGAGCAGCGGCTACGACTCG 
CCGGCCCTGCGCGATGGCCGGTTGCGCCAGGAGAGCTTTCCCTACCCGTACCCGGCCAGCCTCCAGGGCCTG 
GTGTTCAACCTGCGCCGGCCGCTGTTCGAGGACCGCCGGGTACGCCAGGCGCTGAGCCTGCTGTTCGACTTC 
GAATGGACCAACCGGCAGCTCTTCGGCGGTCGCTACAAGCGCCTGCGCAGCTATTTCGACAACTCGGAGATG 
GCCGCTCGCGGCCTGCCCGGCGCCGACGAACTGGCCTTGCTGGAGCCGCTGCGTGGGCAGATCCCCGAGGAG 
GTCTTCGGCCAGGCCTACGCTCCGCCGGTGAACGACGGCAGCGGCGATATCCATGAGCGCCTGGTGCAGGCC 
TACCGCCTGCTCGGCGAGGCCGGCTGGCATGCCGTCGAAGGACGCCTGCTGGATACCGCCGGACGGCCGCTG 
CGCTTCGAACTCCTGCTCCAGGGCAAGGGCCTGGAGCGCGCGCTGCTGCCGTTCCAGCGCAACCTGGCGCGG 
ATCGGCATCGATATGCGCCTGCGCCAGGTGGACGCTTCGCAATACATCGAGCGCATACGTGCGCGGGACTAC 
GACATGATCGTTTCGAGCTTCTCCCAGTCCAATTCGCCGGGCAACGAGCAGTACAGCTTCTGGCATTCCTCC 
AGCTACGCCGATCCCGGCGGCTACAACCGCATCGGCCTGAAGGACCCGGCCATCGACCGGCTGGTGCAGGCG 
GTGGTCGAGGCCGACTCGCGGGCCGCCCTGGAAACCGCCGTGCGCGCCCTCGACCGGGTGCTGCAATGGGGC 
TACTACCTGATCCCGACCTGGTATTCCGACGAGGTCTGGATCGCCAGCTGGAATCGCTTCGGCCGACCGCCG 
CAGGCGCCGCGCTACAGCCTGGGGCTGAACACCTGGTGGGAAGTCCGCGAGCGGGCCGTGCCGAGCCGGCAG 
GCGCAGTGA