ViewGene
Locus Name:
GeneID:
Location:

GeneID:4499
TrivialName: PA14_58510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58510
PAO1 Ortholog Locus:PA4508
Sequence Length:474
Protein Length:157
Start: 5210394
Stop: 5210867
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07896.1|AE004864_8 (AE004864) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 156/157 (99%), Positives = 157/157 (100%)
Sequence:
ATGAAACTCGACGCCTATGACCACCGCATCCTCGCCGCCCTCCAGCGCGACGGCCGCCTGAGCAACGTCCAA
CTGGCCGAGGAGATCGGCCTCTCCCCGTCCCCCTGCCTGCGCCGCGTGCGCCTGCTGGAAGAGGCCGGGGTG
ATTCGCGGCTACCAGGCCAGCATCGACCGCGACGAGGTCGGCCTCGGCCTCACGGTGTTCGTCGGGATCAAG
GTGGAACGCCACCGCCAGGAGCAGGCCGAGGCCTTCCACCGTGCGGTGGTCGACCTCCCGGAGGTGATCTCG
GTGCACCTCGTCTCCGGCGAGTCGGACTTCCTCCTGCAAGTGGTGGTCCCCGACCTGCGCGCCTACGAACGC
CTGCTCAGCGAAACCCTGCTGCGCCTGCCCGGGGTCAGCGACATTCGCAGCAACTTCGCGATCAAGACGGTC
AAGGCGCCCTCGCCGCTGCCGCTCGGCCACCTGGCCGGCTGA
Translation:
MKLDAYDHRILAALQRDGRLSNVQLAEEIGLSPSPCLRRVRLLEEAGVIRGYQASIDRDEVGLGLTVFVGIK
VERHRQEQAEAFHRAVVDLPEVISVHLVSGESDFLLQVVVPDLRAYERLLSETLLRLPGVSDIRSNFAIKTV
KAPSPLPLGHLAG*
AnnotationID:4505GeneID:4499
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 07:07:10
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AsnC family
Cell Localization:()
Synonyms:PA4508
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1522,pfam01037,smart00344
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK24506.1| (AE005921) transcriptional regulator, AsnC family [Caulobacter
           crescentus CB15]
          Length = 194

 Score =  156 bits (394), Expect = 5e-38
 Identities = 77/156 (49%), Positives = 110/156 (70%)


>emb|CAD18528.1| (AL646084) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 152

 Score =  150 bits (380), Expect = 2e-36
 Identities = 76/152 (50%), Positives = 105/152 (69%)






 
Structural Features:
COG1522, Lrp, Transcriptional regulators [Transcription]
CD-Length = 154 residues,  98.1% aligned
Score =  140 bits (354), Expect = 2e-34
Identities = 74/152 (48%), Positives = 99/152 (65%), Gaps = 1/152 (0%)

pfam01037, AsnC_trans_reg, AsnC family. 
CD-Length = 104 residues, 100.0% aligned
Score =  120 bits (303), Expect = 2e-28
Identities = 51/104 (49%), Positives = 72/104 (69%)

smart00344, HTH_ASNC, helix_turn_helix ASNC type; AsnC
CD-Length = 104 residues, 100.0% aligned
Score =  109 bits (275), Expect = 2e-25
Identities = 48/106 (45%), Positives = 72/106 (67%), Gaps = 2/106 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8999




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26141




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31552




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4499_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4499
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6848
                           PA4508_tr
                           translation of PA4508
                           157
                           99.36
                           99.99
                           0
                           776.0
     

     
     
183133
                           gb|AAG07896.1|AE004864_8
                           (AE004864) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           157
                           99.36
                           99.99
                           0
                           776.0
     

     
     
183134
                           emb|CAE25816.1|
                           (BX572594) transcriptional regulators, AsnC family [Rhodopseudomonas palustris CGA009]
                           157
                           54.14
                           71.97
                           4
                           427.0
     

     
     
183142
                           gb|AAN70346.1|AE016676_6
                           (AE016792) transcriptional regulator, AsnC family [Pseudomonas putida KT2440]
                           159
                           49.05
                           67.92
                           3
                           370.0
     

     
     
183136
                           emb|CAD18528.1|
                           (AL646084) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           157
                           48.40
                           66.87
                           5
                           380.0
     

     






      

          
GC ORFID: 47501How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4508Glimmer Score: 

          
Start: 4474072Stop: 4474545

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4508 translation of PA4508Homolog Bit Score 303.0

          
Other Homologs:  t_PA3965 (ORF: BLASTX 147.0), psyr_15may02_Scaffold4_revised_gene5719 (ORF: BLASTX 141.0), psyr_15may02_Scaffold2_revised_gene3172 (ORF: BLASTX 137.0), psyr_15may02_Scaffold3_revised_gene4908 (ORF: BLASTX 136.0), t_PA2028 (ORF: BLASTX 127.0), t_PA2246 (ORF: BLASTX 124.0), t_PA2082 (ORF: BLASTX 123.0), psyr_15may02_Scaffold2_revised_gene3924 (ORF: BLASTX 119.0), t_PA4508 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTCGACGCCTATGACCACCGCATCCTCGCCGCCCTCCAGCGCGACGGCCGCCTGAGCAACGTCCAA 
CTGGCCGAGGAGATCGGCCTCTCCCCGTCCCCCTGCCTGCGCCGCGTGCGCCTGCTGGAAGAGGCCGGGGTG 
ATTCGCGGCTACCAGGCCAGCATCGACCGCGACGAGGTCGGCCTCGGCCTCACGGTGTTCGTCGGGATCAAG 
GTGGAACGCCACCGCCAGGAGCAGGCCGAGGCCTTCCACCGTGCGGTGGTCGACCTCCCGGAGGTGATCTCG 
GTGCACCTCGTCTCCGGCGAGTCGGACTTCCTCCTGCAAGTGGTGGTCCCCGACCTGCGCGCCTACGAACGC 
CTGCTCAGCGAAACCCTGCTGCGCCTGCCCGGGGTCAGCGACATTCGCAGCAACTTCGCGATCAAGACGGTC 
AAGGCGCCCTCGCCGCTGCCGCTCGGCCACCTGGCCGGCTGA