ViewGene

Locus Name:
GeneID:
Location:

GeneID:4497
TrivialName: PA14_28510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28510
PAO1 Ortholog Locus:PA2752
Sequence Length:444
Protein Length:147
Start: 2459289
Stop: 2459732
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06140.1|AE004703_6 (AE004703) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 147/147 (100%), Positives = 147/147 (100%)
Sequence:
GTGTTGACTGACTGGGCCGCGTACGCCGGGCTGTTCCTCTCGGCGTTCGGTTCGGCGACCCTGCTGCCGTTG
CAGTCGGAAACCGTGCTGGCCGCCTTGCTGCTGCGCGGCGGCCAGTCGGTCGCGTGGCTGCTGGCGCTGGCC
ATCGTCGGCAATGTGCTGGGTTCCTGGGTCAACTGGTGGCTGGGTCGCTACCTCGAGCATTTCCGCGGTCGC
CGCTGGTTTCCCGTGGGCGAGGTGCAGTTGCTCAGGGCGCAGCGACACTATCGCCGCTACGGCCGCTGGACC
CTGCTGCTCAGTTGGGTGCCGGTCATCGGCGATCCGCTGACGCTGGTGGCCGGCATCATGCGTGAGCCCTGC
TGGAGTTTCCTGCTGATCGTCGGCCTGGCCAAGACGCTCCGCTACCTCGTCCTGGCTGCGCTGGTGCTGGGC
TGGGCCGGCTGA
Translation:
MLTDWAAYAGLFLSAFGSATLLPLQSETVLAALLLRGGQSVAWLLALAIVGNVLGSWVNWWLGRYLEHFRGR
RWFPVGEVQLLRAQRHYRRYGRWTLLLSWVPVIGDPLTLVAGIMREPCWSFLLIVGLAKTLRYLVLAALVLG
WAG*
AnnotationID:4503GeneID:4497
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 10:10:36
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2752
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1238
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC49420.1| (AL603645) conserved hypothetical membrane protein [Sinorhizobium
           meliloti]
          Length = 148

 Score =  168 bits (425), Expect = 1e-41
 Identities = 79/139 (56%), Positives = 103/139 (74%)

Structural Features:
COG1238, Predicted membrane protein
Genomic Context:
Comment:
ReferenceID:15100
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26137
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36287
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4497_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4497

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6845 PA2752_tr translation of PA2752 147 99.99 99.99 0 777.0
183071 gb|AAG06140.1|AE004703_6 (AE004703) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 147 99.31 99.99 0 774.0
183072 gb|AAN67815.1|AE016412_8 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 149 61.07 72.48 6 464.0
183073 gb|AAO57732.1| (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 147 60.54 73.46 1 466.0
183074 gb|AAL43998.1| (AE009248) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] 147 59.18 71.42 2 431.0
GC ORFID: 47499How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2752Glimmer Score:
Start: 2494637Stop: 2494194
Length: 444
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2752 translation of PA2752Homolog Bit Score 303.0
Other Homologs: t_PA2752 (ORF: GLIMMER)
GC ORF Sequence
GTGTTGACTGACTGGGCCGCGTACGCCGGGCTGTTCCTCTCGGCGTTCGGTTCGGCGACCCTGCTGCCGTTG
CAGTCGGAAACCGTGCTGGCCGCCTTGCTGCTGCGCGGCGGCCAGTCGGTCGCGTGGCTGCTGGCGCTGGCC
ATCGTCGGCAATGTGCTGGGTTCCTGGGTCAACTGGTGGCTGGGTCGCTACCTCGAGCATTTCCGCGGTCGC
CGCTGGTTTCCCGTGGGCGAGGTGCAGTTGCTCAGGGCGCAGCGACACTATCGCCGCTACGGCCGCTGGACC
CTGCTGCTCAGTTGGGTGCCGGTCATCGGCGATCCGCTGACGCTGGTGGCCGGCATCATGCGTGAGCCCTGC
TGGAGTTTCCTGCTGATCGTCGGCCTGGCCAAGACGCTCCGCTACCTCGTCCTGGCTGCGCTGGTGCTGGGC
TGGGCCGGCTGA