ViewGene
Locus Name:
GeneID:
Location:

GeneID:4495
TrivialName: PA14_43620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43620
PAO1 Ortholog Locus:PA1616
Sequence Length:465
Protein Length:154
Start: 3883377
Stop: 3882913
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05005.1|AE004589_8 (AE004589) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 152/154 (98%), Positives = 153/154 (99%)
Sequence:
GTGAAGCTCTGGCTGTTGCGCCACGGCGAGGCCGAACCGCACGCCAGCCGGGACTCCGAGCGGCGCCTGACC
GCCCATGGACGCAAGGAAGTGCTGCAGAGCGCCGCGCGGCTGGCCGGGTTGCCGCTGGACGGGATTCTCGCC
AGCCCCTACGTGCGCGCCCAGCAGACCGCCGAGCTGGTGCGCGAGGCACTGGGCCTGGTCGAGCCGGTCGGC
ACCGCCCCCTGGTTGACCCCCGACGACGATCCGCGCGAGGTGCTCGGTTTCCTCGACGAGCGCAGCGAGCGC
AATCTCCTGCTGGTCAGCCACCAGCCCCTGGTCGGAGCGCTGGGCGGTCTGCTGGTGCATGGCAACCGGCGT
GATCCGTTGCCGATGAGCACTGCCTCGCTGGCCGAGCTGGAAGGCGACTTCGCCGCCGCCGGGCTGATGACC
CTGGTCTCGCTGCATCACCCGCGGCACGGCTAG
Translation:
MKLWLLRHGEAEPHASRDSERRLTAHGRKEVLQSAARLAGLPLDGILASPYVRAQQTAELVREALGLVEPVG
TAPWLTPDDDPREVLGFLDERSERNLLLVSHQPLVGALGGLLVHGNRRDPLPMSTASLAELEGDFAAAGLMT
LVSLHHPRHG*
AnnotationID:4501GeneID:4495
AnnotatorUID: diggins
Modification Date/Time: 2005-05-18 12:12:56
Gene Name:
Confidence Code:3
GeneProduct:putative phosphohistidine phosphatase SixA
Cell Localization:()
Synonyms:sixA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2062
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:3.1.3.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69748.1|AE016611_6 (AE016789) phosphohistidine phosphatase SixA [Pseudomonas putida
           KT2440]
          Length = 152

 Score =  194 bits (492), Expect = 2e-49
 Identities = 96/151 (63%), Positives = 116/151 (76%)

>gb|AAO55731.1| (AE016863) phosphohistidine phosphatase SixA [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 151

 Score =  189 bits (479), Expect = 6e-48
 Identities = 97/150 (64%), Positives = 113/150 (75%)








 
Structural Features:
COG2062, SixA, Phosphohistidine phosphatase SixA 
[Signal transduction mechanisms]
CD-Length = 163 residues,  98.2% aligned
Score =  126 bits (317), Expect = 2e-30
Identities = 66/161 (40%), Positives = 87/161 (54%), Gaps = 8/161 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15098




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26133




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37268




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4495_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4495
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6841
                           PA1616_tr
                           translation of PA1616
                           154
                           98.70
                           99.35
                           0
                           776.0
     

     
     
183029
                           gb|AAG05005.1|AE004589_8
                           (AE004589) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           154
                           98.05
                           99.35
                           0
                           773.0
     

     
     
183031
                           gb|AAO55731.1|
                           (AE016863) phosphohistidine phosphatase SixA [Pseudomonas syringae pv. tomato str. DC3000]
                           154
                           62.33
                           73.37
                           3
                           473.0
     

     
     
183030
                           gb|AAN69748.1|AE016611_6
                           (AE016789) phosphohistidine phosphatase SixA [Pseudomonas putida KT2440]
                           154
                           61.68
                           75.32
                           2
                           487.0
     

     






      

          
GC ORFID: 47497How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1616Glimmer Score: 

          
Start: 1070532Stop: 1070996

          
Length: 465


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1616 translation of PA1616Homolog Bit Score 303.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1010 (ORF: BLASTX 176.0), t_PA1616 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGCTCTGGCTGTTGCGCCACGGCGAGGCCGAACCGCACGCCAGCCGGGACTCCGAGCGGCGCCTGACC 
GCCCATGGACGCAAGGAAGTGCTGCAGAGCGCCGCGCGGCTGGCCGGGTTGCCGCTGGACGGGATTCTCGCC 
AGCCCCTACGTGCGCGCCCAGCAGACCGCCGAGCTGGTGCGCGAGGCACTGGGCCTGGTCGAGCCGGTCGGC 
ACCGCCCCCTGGTTGACCCCCGACGACGATCCGCGCGAGGTGCTCGGTTTCCTCGACGAGCGCAGCGAGCGC 
AATCTCCTGCTGGTCAGCCACCAGCCCCTGGTCGGAGCGCTGGGCGGTCTGCTGGTGCATGGCAACCGGCGT 
GATCCGTTGCCGATGAGCACTGCCTCGCTGGCCGAGCTGGAAGGCGACTTCGCCGCCGCCGGGCTGATGACC 
CTGGTCTCGCTGCATCACCCGCGGCACGGCTAG