ViewGene
Locus Name:
GeneID:
Location:

GeneID:4494
TrivialName: PA14_06810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06810
PAO1 Ortholog Locus:PA0523
Sequence Length:441
Protein Length:146
Start: 591992
Stop: 592432
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03912.1|AE004489_4 (AE004489) nitric-oxide reductase subunit C [Pseudomonas aeruginosa PAO1]
Identities = 145/146 (99%), Positives = 145/146 (99%)
Sequence:
ATGTCCGAGACCTTTACCAAAGGCATGGCCAGGAACATCTATTTCGGCGGGAGTGTGTTCTTCATCCTGCTG
TTCCTGGCCCTGACCTACCACACCGAGAAGACCCTGCCCGAGCGCACCAACGAGGCCGCGATGAGCGCCGCG
GTGGTGCGCGGCAAGCTGGTCTGGGAGCAGAACAACTGCGTCGGCTGCCACACCCTGCTCGGCGAGGGCGCC
TACTTCGCGCCGGAGCTGGGCAACGTGGTCGGACGCCGTGGCGGCGAGGAGGGCTTCAACACCTTCCTCCAG
GCCTGGATGAAGATCCAGCCGCTGAACGTGCCGGGCCGCCGCGCCATGCCGCAGTTCCATCTCAGCGAGGGC
CAGGTCGACGACCTGGCCGAGTTCCTCAAGTGGAGCTCGAAGATCGATACCAACCAATGGCCGCCGAACAAG
GAGGGTTGA
Translation:
MSETFTKGMARNIYFGGSVFFILLFLALTYHTEKTLPERTNEAAMSAAVVRGKLVWEQNNCVGCHTLLGEGA
YFAPELGNVVGRRGGEEGFNTFLQAWMKIQPLNVPGRRAMPQFHLSEGQVDDLAEFLKWSSKIDTNQWPPNK
EG*
AnnotationID:4500GeneID:4494
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:43
Gene Name:norC
Confidence Code:1
GeneProduct:nitric-oxide reductase subunit C
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:cytochrome c subunit of nitric oxide reductase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:1.7.99.7
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG34383.1|AF197467_1 (AF197467) nitric oxide reductase cytochrome c subunit; NorC
           [Pseudomonas fluorescens]
          Length = 146

 Score =  260 bits (664), Expect = 2e-69
 Identities = 117/146 (80%), Positives = 135/146 (92%)

>emb|CAA82228.1| (Z28384) cytochrome c subunit of nitric oxide reductase
           [Pseudomonas stutzeri]
          Length = 146

 Score =  256 bits (653), Expect = 4e-68
 Identities = 119/146 (81%), Positives = 128/146 (87%)

>emb|CAD85914.1| (BX321863) nitric oxide reductase, cytochrome c-containing subunit
           [Nitrosomonas europaea ATCC 19718]
          Length = 150

 Score =  177 bits (448), Expect = 2e-44
 Identities = 85/150 (56%), Positives = 108/150 (72%), Gaps = 4/150 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8989




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26131




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33830




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4494_cdd.html


    		




 
URL:

















    ReferenceID:35300




  
Author/Investigator(s):
        Arai H, Igarashi Y, Kodama T.





  
Title:
        The structural genes for nitric oxide reductase from Pseudomonas aeruginosa.




  
PubMed:
        7711073


MedLine:
        




    
Source:
Biochim Biophys Acta. 1995 Apr 4;1261(2):279-84.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7711073









           
Homologs By Global Alignment 

           

       



     
Gene ID:4494
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6840
                           PA0523_tr
                           translation of PA0523
                           146
                           99.31
                           99.31
                           0
                           779.0
     

     
     
183007
                           gb|AAG03912.1|AE004489_4
                           (AE004489) nitric-oxide reductase subunit C [Pseudomonas aeruginosa PAO1]
                           146
                           99.31
                           99.31
                           0
                           779.0
     

     
     
183008
                           dbj|BAA07329.1|
                           (D38133) cytochrome c subunit of nitric oxide reductase [Pseudomonas aeruginosa]
                           146
                           99.31
                           99.31
                           0
                           779.0
     

     
     
183010
                           emb|CAA82228.1|
                           (Z28384) cytochrome c subunit of nitric oxide reductase [Pseudomonas stutzeri]
                           146
                           81.50
                           87.67
                           0
                           653.0
     

     
     
183009
                           gb|AAG34383.1|AF197467_1
                           (AF197467) nitric oxide reductase cytochrome c subunit; NorC [Pseudomonas fluorescens]
                           146
                           80.13
                           92.46
                           0
                           664.0
     

     






      

          
GC ORFID: 47496How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0523Glimmer Score: 

          
Start: 6393334Stop: 6393774

          
Length: 441


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0523 translation of PA0523Homolog Bit Score 304.0

          
Other Homologs:  t_PA0523 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGAGACCTTTACCAAAGGCATGGCCAGGAACATCTATTTCGGCGGGAGTGTGTTCTTCATCCTGCTG 
TTCCTGGCCCTGACCTACCACACCGAGAAGACCCTGCCCGAGCGCACCAACGAGGCCGCGATGAGCGCCGCG 
GTGGTGCGCGGCAAGCTGGTCTGGGAGCAGAACAACTGCGTCGGCTGCCACACCCTGCTCGGCGAGGGCGCC 
TACTTCGCGCCGGAGCTGGGCAACGTGGTCGGACGCCGTGGCGGCGAGGAGGGCTTCAACACCTTCCTCCAG 
GCCTGGATGAAGATCCAGCCGCTGAACGTGCCGGGCCGCCGCGCCATGCCGCAGTTCCATCTCAGCGAGGGC 
CAGGTCGACGACCTGGCCGAGTTCCTCAAGTGGAGCTCGAAGATCGATACCAACCAATGGCCGCCGAACAAG 
GAGGGTTGA