ViewGene
Locus Name:
GeneID:
Location:

GeneID:4493
TrivialName: PA14_63240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63240
PAO1 Ortholog Locus:PA4784
Sequence Length:468
Protein Length:155
Start: 5643724
Stop: 5644191
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08170.1|AE004892_1 (AE004892) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 155/155 (100%), Positives = 155/155 (100%)
Sequence:
ATGGACAAATACGACCGTGCGCTCCTCGCCGCCCTGATCGACAACGGCCGCCTGACCTTCGCCGAACTGGCC
CGGCGCATCAACCTGTCGCCCCCGGCGGTGGCCGACCGGGTGGCCAAGCTGGAGGCCGAAGGGGTGATTACC
GGCTACCACGCCTCGGTGAACCTGGCCAAGCTCGGCCTGCCCATCGAGTGCGTGATCGAACTGCGGATCACC
GAGAAGGATTGCCAGTCGGTGCTCGACGAACTGGCCCGGATCCCCCAACTGACCCTCTGCCACCGGATCACC
GGCGACGCCTGCGTGCTGATGAAGGCCGCCGTGGCTTCGATGCCGGAGCTGCAGGACCTGATCGACCGGCTG
ATGAAGTTCGGCATCAGCAAGACCTCGATGATCCTCTCCACCCCCTTCGCCGACCGCCAGCCGGCAAGCCTG
CGGGGGCAGGACGGCAATGGCGGATGTGCGGCGTGA
Translation:
MDKYDRALLAALIDNGRLTFAELARRINLSPPAVADRVAKLEAEGVITGYHASVNLAKLGLPIECVIELRIT
EKDCQSVLDELARIPQLTLCHRITGDACVLMKAAVASMPELQDLIDRLMKFGISKTSMILSTPFADRQPASL
RGQDGNGGCAA*
AnnotationID:4499GeneID:4493
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 08:08:54
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4784
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1522,smart00344,pfam01037
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC68298.1| (AP005023) putative AsnC-family transcriptional regulator
           [Streptomyces avermitilis MA-4680]
          Length = 148

 Score =  105 bits (261), Expect = 1e-22
 Identities = 57/142 (40%), Positives = 82/142 (57%)

>dbj|BAB49107.1| (AP002998) probable transcriptional regulator [Mesorhizobium loti]
          Length = 160

 Score =  102 bits (254), Expect = 8e-22
 Identities = 48/132 (36%), Positives = 83/132 (62%)








 
Structural Features:
COG1522, Lrp, Transcriptional regulators [Transcription]
CD-Length = 154 residues,  79.9% aligned
Score =  108 bits (271), Expect = 3e-25
Identities = 45/123 (36%), Positives = 76/123 (61%), Gaps = 2/123 (1%)

smart00344, HTH_ASNC, helix_turn_helix ASNC type
CD-Length = 104 residues, 100.0% aligned
Score = 96.7 bits (241), Expect = 1e-21
Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 1/104 (0%)

pfam01037, AsnC_trans_reg, AsnC family.
CD-Length = 104 residues,  97.1% aligned
Score = 81.0 bits (200), Expect = 6e-17
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 3/101 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8987




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26129




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37664




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4493_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4493
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6839
                           PA4784_tr
                           translation of PA4784
                           155
                           99.99
                           99.99
                           0
                           779.0
     

     
     
183003
                           gb|AAG08170.1|AE004892_1
                           (AE004892) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           155
                           99.99
                           99.99
                           0
                           779.0
     

     
     
183004
                           gb|AAQ58237.1|
                           (AE016911) probable transcriptional regulator, AsnC family [Chromobacterium violaceum ATCC 12472]
                           155
                           49.03
                           68.38
                           8
                           384.0
     

     
     
183005
                           dbj|BAC90622.1|
                           (AP006577) AsnC family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421]
                           163
                           38.65
                           54.60
                           14
                           296.0
     

     
     
183006
                           dbj|BAC68298.1|
                           (AP005023) putative AsnC-family transcriptional regulator [Streptomyces avermitilis MA-4680]
                           159
                           35.84
                           51.57
                           15
                           257.0
     

     






      

          
GC ORFID: 47495How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4784Glimmer Score: 

          
Start: 4907404Stop: 4907871

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4784 translation of PA4784Homolog Bit Score 304.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5667 (ORF: BLASTX 172.0), t_PA4784 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAAATACGACCGTGCGCTCCTCGCCGCCCTGATCGACAACGGCCGCCTGACCTTCGCCGAACTGGCC 
CGGCGCATCAACCTGTCGCCCCCGGCGGTGGCCGACCGGGTGGCCAAGCTGGAGGCCGAAGGGGTGATTACC 
GGCTACCACGCCTCGGTGAACCTGGCCAAGCTCGGCCTGCCCATCGAGTGCGTGATCGAACTGCGGATCACC 
GAGAAGGATTGCCAGTCGGTGCTCGACGAACTGGCCCGGATCCCCCAACTGACCCTCTGCCACCGGATCACC 
GGCGACGCCTGCGTGCTGATGAAGGCCGCCGTGGCTTCGATGCCGGAGCTGCAGGACCTGATCGACCGGCTG 
ATGAAGTTCGGCATCAGCAAGACCTCGATGATCCTCTCCACCCCCTTCGCCGACCGCCAGCCGGCAAGCCTG 
CGGGGGCAGGACGGCAATGGCGGATGTGCGGCGTGA