ViewGene
Locus Name:
GeneID:
Location:

GeneID:4492
TrivialName: PA14_62780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62780
PAO1 Ortholog Locus:PA4746
Sequence Length:459
Protein Length:152
Start: 5603890
Stop: 5603432
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08132.1|AE004888_7 (AE004888) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 152/152 (100%), Positives = 152/152 (100%)
Sequence:
GTGTCGAGCAAGCTAGAACAGTTGCAGGCCTTGCTGGCCCCTGTGGTCGAGGCGCTCGGCTATGAGTGCTGG
GGCGTCGAGTTCATTTCCCAGGGTCGTCATTCGGTGTTGCGCGTCTATATCGACCGCCCCGAAGGCATCCTC
ATCGATGACTGTGAAGCCGTCAGTCGGCAGGTCAGCGGTATTCTCGACGTCGAAGACCCGATCAGCGGCGAG
TACACCCTGGAGGTGTCCTCTCCGGGCATGGATCGGCCGCTGTTCACCCTCGAACAGTTCGCCAAGCATGCC
GGCGAGCAAGTGAAGATCAGGCTGCGTTCGCCCTATGAGGGGCGGCGTAACTACCAAGGCATTCTCCGTGGT
GTGGAGGAGCAGGATGTGGTGGTCCTGGTGGACGATCACGAGTACCTGCTGCCGATCGATTCGATCGACAAG
GCCAACATCATTCCCCGTTTTGATTGA
Translation:
MSSKLEQLQALLAPVVEALGYECWGVEFISQGRHSVLRVYIDRPEGILIDDCEAVSRQVSGILDVEDPISGE
YTLEVSSPGMDRPLFTLEQFAKHAGEQVKIRLRSPYEGRRNYQGILRGVEEQDVVVLVDDHEYLLPIDSIDK
ANIIPRFD*
AnnotationID:4498GeneID:4492
AnnotatorUID: diggins
Modification Date/Time: 2004-12-20 09:09:27
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:yhbC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC45133.1| (U85643) 15 kDa protein [Pseudomonas syringae pv. syringae]
          Length = 158

 Score =  254 bits (649), Expect = 1e-67
 Identities = 120/152 (78%), Positives = 140/152 (92%)

>gb|AAN82368.1|AE016767_128 (AE016767) Hypothetical protein yhbC [Escherichia coli CFT073]
          Length = 154

 Score =  146 bits (369), Expect = 3e-35
 Identities = 74/150 (49%), Positives = 104/150 (69%), Gaps = 2/150 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15096




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26127




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36558




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4492_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4492
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6838
                           PA4746_tr
                           translation of PA4746
                           152
                           99.99
                           99.99
                           0
                           778.0
     

     
     
182967
                           gb|AAG08132.1|AE004888_7
                           (AE004888) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           152
                           99.34
                           99.99
                           0
                           775.0
     

     
     
182969
                           gb|AAC45133.1|
                           (U85643) 15 kDa protein [Pseudomonas syringae pv. syringae]
                           158
                           76.58
                           88.60
                           6
                           652.0
     

     
     
182970
                           gb|AAO57940.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           158
                           75.94
                           88.60
                           6
                           648.0
     

     
     
182968
                           gb|AAN70286.1|AE016669_4
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           169
                           75.73
                           84.02
                           17
                           680.0
     

     






      

          
GC ORFID: 47494How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4746Glimmer Score: 

          
Start: 4867570Stop: 4867112

          
Length: 459


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4746 translation of PA4746Homolog Bit Score 304.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5491 (ORF: BLASTX 258.0), t_PA4746 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCGAGCAAGCTAGAACAGTTGCAGGCCTTGCTGGCCCCTGTGGTCGAGGCGCTCGGCTATGAGTGCTGG 
GGCGTCGAGTTCATTTCCCAGGGTCGTCATTCGGTGTTGCGCGTCTATATCGACCGCCCCGAAGGCATCCTC 
ATCGATGACTGTGAAGCCGTCAGTCGGCAGGTCAGCGGTATTCTCGACGTCGAAGACCCGATCAGCGGCGAG 
TACACCCTGGAGGTGTCCTCTCCGGGCATGGATCGGCCGCTGTTCACCCTCGAACAGTTCGCCAAGCATGCC 
GGCGAGCAAGTGAAGATCAGGCTGCGTTCGCCCTATGAGGGGCGGCGTAACTACCAAGGCATTCTCCGTGGT 
GTGGAGGAGCAGGATGTGGTGGTCCTGGTGGACGATCACGAGTACCTGCTGCCGATCGATTCGATCGACAAG 
GCCAACATCATTCCCCGTTTTGATTGA