ViewGene
Locus Name:
GeneID:
Location:

GeneID:4491
TrivialName: PA14_62430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62430
PAO1 Ortholog Locus:PA4718
Sequence Length:477
Protein Length:158
Start: 5569414
Stop: 5568938
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08104.1|AE004885_9 (AE004885) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/158 (99%), Positives = 157/158 (99%)
Sequence:
ATGAAACGCTCGAAACTCGCACTCCTTCCGCTGGGCCTGGCGCTGCTGCTGGCCGCCTGCGCCAGCGATCCG
CTGCCGATCCCGCAGCACAGCTTCGGGGTCTATGCCACCGCCAGCACGCCTTCCGCGGCGTTCCGCACCCTG
GCCGACCCGCAGGGCAAGGCCATGCTGGTGGCGCTGAAGCCCAGCCTGACCCAGGCTGACGTACTCCGCGCC
GAGGTCCTGTACGACCAGAACGGTCGACCCGGCGTCGAAGTCACCTTCACCGAACCGGCCGCCCGCCGCCTG
GCCGCGCTGACCGGCGAGGCCCGGGGGCGCACTCTCGCGGTACTGGTGGACGGGCGCCTGCGCCTGGCGCCG
CGGGTGCGCGAGCCGATCCGCAACGGCAAGGTCTATCTCGACGGGTTGGCTTCGGCCTACGAGGCCAGGGAA
CTGGCCGATCAGTTGAATGCGCTGGGAAGCCAGCCGGGGCGCTAA
Translation:
MKRSKLALLPLGLALLLAACASDPLPIPQHSFGVYATASTPSAAFRTLADPQGKAMLVALKPSLTQADVLRA
EVLYDQNGRPGVEVTFTEPAARRLAALTGEARGRTLAVLVDGRLRLAPRVREPIRNGKVYLDGLASAYEARE
LADQLNALGSQPGR*
AnnotationID:4497GeneID:4491
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 06:06:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4718
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8983




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26125




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37615




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4491_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4491
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6837
                           PA4718_tr
                           translation of PA4718
                           158
                           99.36
                           99.36
                           0
                           778.0
     

     
     
182966
                           gb|AAG08104.1|AE004885_9
                           (AE004885) hypothetical protein PA4718 [Pseudomonas aeruginosa PAO1]
                           158
                           99.36
                           99.36
                           0
                           778.0
     

     






      

          
GC ORFID: 47493How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4718Glimmer Score: 

          
Start: 4833094Stop: 4832618

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4718 translation of PA4718Homolog Bit Score 304.0

          
Other Homologs:  t_PA4718 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGCTCGAAACTCGCACTCCTTCCGCTGGGCCTGGCGCTGCTGCTGGCCGCCTGCGCCAGCGATCCG 
CTGCCGATCCCGCAGCACAGCTTCGGGGTCTATGCCACCGCCAGCACGCCTTCCGCGGCGTTCCGCACCCTG 
GCCGACCCGCAGGGCAAGGCCATGCTGGTGGCGCTGAAGCCCAGCCTGACCCAGGCTGACGTACTCCGCGCC 
GAGGTCCTGTACGACCAGAACGGTCGACCCGGCGTCGAAGTCACCTTCACCGAACCGGCCGCCCGCCGCCTG 
GCCGCGCTGACCGGCGAGGCCCGGGGGCGCACTCTCGCGGTACTGGTGGACGGGCGCCTGCGCCTGGCGCCG 
CGGGTGCGCGAGCCGATCCGCAACGGCAAGGTCTATCTCGACGGGTTGGCTTCGGCCTACGAGGCCAGGGAA 
CTGGCCGATCAGTTGAATGCGCTGGGAAGCCAGCCGGGGCGCTAA