ViewGene

Locus Name:
GeneID:
Location:

GeneID:4490
TrivialName: PA14_62390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62390
PAO1 Ortholog Locus:PA4714
Sequence Length:450
Protein Length:149
Start: 5565188
Stop: 5565637
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08100.1|AE004885_5 (AE004885) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 149/149 (100%), Positives = 149/149 (100%)
Sequence:
ATGCGCCGCTTCGCTCCCCTGGCCGTCCTGGCCGCCACCCTGCTCCACGGTTCCCTGGTCCAGGCCGCCGAA
CCGCTGGCCATCGACGTCCACCGCGACGCCAACTGCGGCTGCTGCAAGGACTGGATCAAGCACCTCGAAGCC
AACGGTTTCAAGGTCACCGACCATGTGGAAGCAGACATGAGCGCAGTCAAGAGCCGCCTCGGCGTGCCCTAC
AGCATGGGCTCCTGTCATACCGGAGTGATCGACGGCAAGTTCGTCGAAGGCCACGTTCCGGCAGCCGACATC
CTCAAGCTGCGCGAACGCGCCGACCTGGTCGGCGCCGCCGTACCGGGCATGCCGGTCGGCTCGCCGGGCATG
GAGATGGGCGACCGCCAGGACGCCTACCAGGTCGTCGGCCTGACCAGGAGCGGCCAGGCCTCGGTACTGGCG
GAGTACCCGGGACGCTAA
Translation:
MRRFAPLAVLAATLLHGSLVQAAEPLAIDVHRDANCGCCKDWIKHLEANGFKVTDHVEADMSAVKSRLGVPY
SMGSCHTGVIDGKFVEGHVPAADILKLRERADLVGAAVPGMPVGSPGMEMGDRQDAYQVVGLTRSGQASVLA
EYPGR*
AnnotationID:4496GeneID:4490
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 06:06:26
Gene Name:
Confidence Code:3
GeneProduct:putative metal-binding protein
Cell Localization:()
Synonyms:PA4714
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3019
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE34836.1| (BX640450) putative exported protein [Bordetella bronchiseptica]
          Length = 153

 Score =  134 bits (336), Expect = 2e-31
 Identities = 68/143 (47%), Positives = 90/143 (62%), Gaps = 4/143 (2%)

>gb|AAO08777.1|AE016797_232 (AE016797) Predicted metal-binding protein [Vibrio vulnificus
           CMCP6]
          Length = 141

 Score =  115 bits (287), Expect = 1e-25
 Identities = 59/132 (44%), Positives = 77/132 (58%), Gaps = 5/132 (3%)
Structural Features:
COG3019, COG3019, Predicted metal-binding protein
CD-Length = 149 residues, 100.0% aligned
Score =  202 bits (516), Expect = 1e-53
Identities = 75/150 (50%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Genomic Context:
Comment:
ReferenceID:8981
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26123
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37634
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4490_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4490

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6836 PA4714_tr translation of PA4714 149 99.99 99.99 0 778.0
182948 gb|AAG08100.1|AE004885_5 (AE004885) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 149 99.99 99.99 0 778.0
182949 gb|AAN70942.1|AE016738_4 (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440] 154 61.68 68.83 8 476.0
182950 gb|AAN67816.1|AE016412_9 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 151 59.60 69.53 11 458.0
182951 emb|CAE34836.1| (BX640450) putative exported protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 159 44.02 58.49 16 339.0
GC ORFID: 47492How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4714Glimmer Score:
Start: 4828868Stop: 4829317
Length: 450
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4714 translation of PA4714Homolog Bit Score 304.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1599 (ORF: BLASTX 169.0), t_PA4714 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCGCTTCGCTCCCCTGGCCGTCCTGGCCGCCACCCTGCTCCACGGTTCCCTGGTCCAGGCCGCCGAA
CCGCTGGCCATCGACGTCCACCGCGACGCCAACTGCGGCTGCTGCAAGGACTGGATCAAGCACCTCGAAGCC
AACGGTTTCAAGGTCACCGACCATGTGGAAGCAGACATGAGCGCAGTCAAGAGCCGCCTCGGCGTGCCCTAC
AGCATGGGCTCCTGTCATACCGGAGTGATCGACGGCAAGTTCGTCGAAGGCCACGTTCCGGCAGCCGACATC
CTCAAGCTGCGCGAACGCGCCGACCTGGTCGGCGCCGCCGTACCGGGCATGCCGGTCGGCTCGCCGGGCATG
GAGATGGGCGACCGCCAGGACGCCTACCAGGTCGTCGGCCTGACCAGGAGCGGCCAGGCCTCGGTACTGGCG
GAGTACCCGGGACGCTAA