ViewGene
Locus Name:
GeneID:
Location:

GeneID:4488
TrivialName: PA14_37320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37320
PAO1 Ortholog Locus:PA2109
Sequence Length:477
Protein Length:158
Start: 3322033
Stop: 3322509
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05497.1|AE004638_7 (AE004638) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/158 (99%), Positives = 158/158 (100%)
Sequence:
ATGCCCAGTCGCCTGTCACTGATCGCCGCCCTGCTGTTGCCCCTGGCCGTCCAGGCCGAACCCGCTGATACC
CGCGCCCTGCTCGCCGACAGCCTGGCCGACAGCCAGGCCCAGGTGGAGGCAGCCGAGCAAGCCATGCGCCGT
TCCGAAAACAAGGCGGTGCAGCTCTATGCCAAGCGCGTACTCACCGAACAGCAGGAGTTCGACCATCAGTTG
CGCGCCCTGGCCGGGGAAAAGGCCTTGGCGCTGCCCTCGCCGCGCCAGACCGAACGGCAGGCCGCCGCTCCC
GGCGGCTTCGACGAGCGCGGTTTCCTCGACGCGCAGATTCGCCAGCAGGACCGTCTGGTCGCACGCTTCGAG
GGAATCGCCCGAAACTCCGCCGATCCCGACCTGCGCCGCTTCGCCGACGAATGGCTGGCGCGCTTCTACCAC
CACCGCGAACTGGCCGACCAGTTGCGTAGCGGCCGCGCCGACTGA
Translation:
MPSRLSLIAALLLPLAVQAEPADTRALLADSLADSQAQVEAAEQAMRRSENKAVQLYAKRVLTEQQEFDHQL
RALAGEKALALPSPRQTERQAAAPGGFDERGFLDAQIRQQDRLVARFEGIARNSADPDLRRFADEWLARFYH
HRELADQLRSGRAD*
AnnotationID:4494GeneID:4488
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 08:08:30
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein
Cell Localization:()
Synonyms:PA2109
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3652
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3652, COG3652, Predicted outer membrane protein 
CD-Length = 170 residues,  96.5% aligned
Score =  125 bits (316), Expect = 2e-30
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 8/164 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8977




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26119




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32589




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4488_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4488
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6834
                           PA2109_tr
                           translation of PA2109
                           158
                           99.36
                           99.99
                           0
                           778.0
     

     
     
182940
                           gb|AAG05497.1|AE004638_7
                           (AE004638) hypothetical protein PA2109 [Pseudomonas aeruginosa PAO1]
                           158
                           99.36
                           99.99
                           0
                           778.0
     

     






      

          
GC ORFID: 47490How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2109Glimmer Score: 

          
Start: 1631881Stop: 1631405

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2109 translation of PA2109Homolog Bit Score 304.0

          
Other Homologs:  t_PA2109 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAGTCGCCTGTCACTGATCGCCGCCCTGCTGTTGCCCCTGGCCGTCCAGGCCGAACCCGCTGATACC 
CGCGCCCTGCTCGCCGACAGCCTGGCCGACAGCCAGGCCCAGGTGGAGGCAGCCGAGCAAGCCATGCGCCGT 
TCCGAAAACAAGGCGGTGCAGCTCTATGCCAAGCGCGTACTCACCGAACAGCAGGAGTTCGACCATCAGTTG 
CGCGCCCTGGCCGGGGAAAAGGCCTTGGCGCTGCCCTCGCCGCGCCAGACCGAACGGCAGGCCGCCGCTCCC 
GGCGGCTTCGACGAGCGCGGTTTCCTCGACGCGCAGATTCGCCAGCAGGACCGTCTGGTCGCACGCTTCGAG 
GGAATCGCCCGAAACTCCGCCGATCCCGACCTGCGCCGCTTCGCCGACGAATGGCTGGCGCGCTTCTACCAC 
CACCGCGAACTGGCCGACCAGTTGCGTAGCGGCCGCGCCGACTGA