ViewGene
Locus Name:
GeneID:
Location:

GeneID:4487
TrivialName: PA14_38300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38300
PAO1 Ortholog Locus:PA2028
Sequence Length:474
Protein Length:157
Start: 3414421
Stop: 3413948
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05416.1|AE004629_5 (AE004629) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 156/157 (99%), Positives = 157/157 (100%)
Sequence:
ATGTCCATTCCACTGGATATGTACGATCAGCGTATTCTCGCTTTGCTGCAGGAGGAATCCTCGCTTTCCACC
GCCGAGATCGCCGAGCGCATCGGACTTTCCCAGTCGCCCTGCTGGCGGCGCATCCAACGCCTGAAGGAGGAG
GGGGTGATCCGCAAGCAGGTGACCCTGCTCGACCGCAAGAAGATCGGCCTGAATACCCAGGTATTCGCCCAG
ATCAAGCTCAACGCCCATGGGCGCAAGAACCTCACCGACTTCGCCGAGGCGATGCACCAGTTTCCCGAGGTG
CTGGAGTGCCACGTACTGATGGGCGCGGTGGACTTCATGCTGCGTATCGTCACCCGCGATATCGAATCCTAC
GAACGCTTTTTCTTCGAGAAGCTGTCGGCGGTGCCGGGCATCCAGGAAGTGAACTCCATCGTCGCCTTGTCG
GAAATCAAATCCACCACTACCTTGCCCCTGCTCGCTCCCTGA
Translation:
MSIPLDMYDQRILALLQEESSLSTAEIAERIGLSQSPCWRRIQRLKEEGVIRKQVTLLDRKKIGLNTQVFAQ
IKLNAHGRKNLTDFAEAMHQFPEVLECHVLMGAVDFMLRIVTRDIESYERFFFEKLSAVPGIQEVNSIVALS
EIKSTTTLPLLAP*
AnnotationID:4493GeneID:4487
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 21:09:23
Gene Name:
Confidence Code:3
GeneProduct:putative glutamate uptake regulatory protein
Cell Localization:()
Synonyms:grp
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative transcriptional regulator, AsnC family
Functional Category Confidence Code:5
COGs:COG1522,pfam01037,smart00344
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70753.1|AE016719_4 (AE016793) transcriptional regulator BkdR, putative [Pseudomonas
           putida KT2440]
          Length = 156

 Score =  251 bits (642), Expect = 8e-67
 Identities = 125/154 (81%), Positives = 141/154 (91%)

>gb|AAO53866.1| (AE016857) transcriptional regulator, AsnC family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 159

 Score =  251 bits (640), Expect = 1e-66

>dbj|BAB48120.1| (AP002995) transcriptional regulator, probable glutamate uptake
           regulator [Mesorhizobium loti]
          Length = 163

 Score =  142 bits (358), Expect = 7e-34
 Identities = 66/150 (44%), Positives = 111/150 (74%), Gaps = 1/150 (0%)








 
Structural Features:
COG1522, Lrp, Transcriptional regulators [Transcription]
CD-Length = 154 residues,  99.4% aligned
Score =  133 bits (336), Expect = 8e-33
Identities = 69/154 (44%), Positives = 105/154 (68%), Gaps = 1/154 (0%)

pfam01037, AsnC_trans_reg, AsnC family.
CD-Length = 104 residues, 100.0% aligned
Score =  118 bits (297), Expect = 4e-28
Identities = 48/104 (46%), Positives = 69/104 (66%)

smart00344, HTH_ASNC, helix_turn_helix ASNC type; AsnC
CD-Length = 104 residues, 100.0% aligned
Score =  103 bits (259), Expect = 8e-24
Identities = 40/106 (37%), Positives = 68/106 (64%), Gaps = 2/106 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8975




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26117




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32668




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4487_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4487
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6831
                           PA2028_tr
                           translation of PA2028
                           157
                           99.36
                           99.99
                           0
                           778.0
     

     
     
182906
                           gb|AAG05416.1|AE004629_5
                           (AE004629) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           157
                           99.36
                           99.99
                           0
                           778.0
     

     
     
182907
                           gb|AAN70753.1|AE016719_4
                           (AE016793) transcriptional regulator BkdR, putative [Pseudomonas putida KT2440]
                           158
                           79.74
                           89.87
                           3
                           638.0
     

     
     
182908
                           gb|AAO53866.1|
                           (AE016857) transcriptional regulator, AsnC family [Pseudomonas syringae pv. tomato str. DC3000]
                           159
                           77.35
                           89.93
                           2
                           638.0
     

     
     
182909
                           gb|AAO56642.1|
                           (AE016867) transcriptional regulator, AsnC family [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           52.22
                           71.33
                           2
                           424.0
     

     






      

          
GC ORFID: 47489How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2028Glimmer Score: 

          
Start: 1539489Stop: 1539962

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2028 translation of PA2028Homolog Bit Score 304.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3172 (ORF: BLASTX 248.0), psyr_15may02_Scaffold8_revised_gene7971 (ORF: BLASTX 130.0), t_PA4508 (ORF: BLASTX 127.0), t_PA2028 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCATTCCACTGGATATGTACGATCAGCGTATTCTCGCTTTGCTGCAGGAGGAATCCTCGCTTTCCACC 
GCCGAGATCGCCGAGCGCATCGGACTTTCCCAGTCGCCCTGCTGGCGGCGCATCCAACGCCTGAAGGAGGAG 
GGGGTGATCCGCAAGCAGGTGACCCTGCTCGACCGCAAGAAGATCGGCCTGAATACCCAGGTATTCGCCCAG 
ATCAAGCTCAACGCCCATGGGCGCAAGAACCTCACCGACTTCGCCGAGGCGATGCACCAGTTTCCCGAGGTG 
CTGGAGTGCCACGTACTGATGGGCGCGGTGGACTTCATGCTGCGTATCGTCACCCGCGATATCGAATCCTAC 
GAACGCTTTTTCTTCGAGAAGCTGTCGGCGGTGCCGGGCATCCAGGAAGTGAACTCCATCGTCGCCTTGTCG 
GAAATCAAATCCACCACTACCTTGCCCCTGCTCGCTCCCTGA