ViewGene
Locus Name:
GeneID:
Location:

GeneID:4486
TrivialName: PA14_67700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67700
PAO1 Ortholog Locus:PA5126
Sequence Length:468
Protein Length:155
Start: 6048250
Stop: 6047783
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08511.1|AE004926_1 (AE004926) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/155 (97%), Positives = 153/155 (98%)
Sequence:
ATGCAGGGCTCCGGAGCAGATAACGGGCGGCATTCTACCTCCGCCATCGACGATCTGCGGCGCCAGCGCTGG
AAAGTCTGGGGTGCGCTGGTGCTTGCCGGGTTGTTGTTCGGGCTGATGCTCGGCAGGTTGTTCGGCCCCGCT
TCGCTGCCGATGTCTGCGCCGCAACTGCTGGCGGTCGGGGAGAGCGAGCAGGGCCTGGTCCTGCGCTTCGAT
CGCCAGGCTGCGGTTACGGCGGCACGGGTGGAGGGTGCCCTGACGTTGCGCATCGTCGCCCAGGGCGCGGCG
CAGCAGGGAGACGGGCGATGGCTGGGCCAGCCGTTGCGCTGGCGCGTCCGCGAGGAGGGAAAGGCGCTGCTG
TTGAGCCTGGTCTCGACCCGCCCCTTGCAGGGGCGCTGGCAGTGGTCGGAGGACGGCGAGGGCTGGCGCCTG
GTCGTCGAACTGCAGGAGCGCGACGGCCGGGAATAA
Translation:
MQGSGADNGRHSTSAIDDLRRQRWKVWGALVLAGLLFGLMLGRLFGPASLPMSAPQLLAVGESEQGLVLRFD
RQAAVTAARVEGALTLRIVAQGAAQQGDGRWLGQPLRWRVREEGKALLLSLVSTRPLQGRWQWSEDGEGWRL
VVELQERDGRE*
AnnotationID:4492GeneID:4486
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 09:09:53
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5126
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8973




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26115




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4486
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6830
                           PA5126_tr
                           translation of PA5126
                           155
                           97.41
                           98.70
                           0
                           781.0
     

     
     
182905
                           gb|AAG08511.1|AE004926_1
                           (AE004926) hypothetical protein PA5126 [Pseudomonas aeruginosa PAO1]
                           155
                           97.41
                           98.70
                           0
                           781.0
     

     






      

          
GC ORFID: 47488How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5126Glimmer Score: 

          
Start: 5311935Stop: 5311468

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5126 translation of PA5126Homolog Bit Score 305.0

          
Other Homologs:  t_PA5126 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGGGCTCCGGAGCAGATAACGGGCGGCATTCTACCTCCGCCATCGACGATCTGCGGCGCCAGCGCTGG 
AAAGTCTGGGGTGCGCTGGTGCTTGCCGGGTTGTTGTTCGGGCTGATGCTCGGCAGGTTGTTCGGCCCCGCT 
TCGCTGCCGATGTCTGCGCCGCAACTGCTGGCGGTCGGGGAGAGCGAGCAGGGCCTGGTCCTGCGCTTCGAT 
CGCCAGGCTGCGGTTACGGCGGCACGGGTGGAGGGTGCCCTGACGTTGCGCATCGTCGCCCAGGGCGCGGCG 
CAGCAGGGAGACGGGCGATGGCTGGGCCAGCCGTTGCGCTGGCGCGTCCGCGAGGAGGGAAAGGCGCTGCTG 
TTGAGCCTGGTCTCGACCCGCCCCTTGCAGGGGCGCTGGCAGTGGTCGGAGGACGGCGAGGGCTGGCGCCTG 
GTCGTCGAACTGCAGGAGCGCGACGGCCGGGAATAA