ViewGene
Locus Name:
GeneID:
Location:

GeneID:4485
TrivialName: PA14_08810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08810
PAO1 Ortholog Locus:PA4267
Sequence Length:471
Protein Length:156
Start: 755164
Stop: 755634
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07655.1|AE004842_4 (AE004842) 30S ribosomal protein S7 [Pseudomonas aeruginosa PAO1]
Identities = 156/156 (100%), Positives = 156/156 (100%)
Sequence:
ATGCCAAGACGTCGTGTAGCGGCCAAGCGTGAAGTGCTGGCTGATCCGAAATACGGAAGCCAGATCCTGGCC
AAGTTCATGAACCACGTGATGGAAAGCGGCAAGAAAGCCGTTGCCGAGCGTATCGTTTACGGTGCGCTGGAC
AAGGTGAAGGAACGCGGCAAGGCCGATCCCCTGGAAACCTTCGAAAAAGCTCTCGATGCCATCGCTCCGCTG
GTCGAAGTGAAGTCCCGCCGCGTAGGTGGTGCGACTTACCAGGTTCCGGTCGAAGTCCGTCCGTCCCGTCGT
AATGCCCTGGCCATGCGTTGGCTGGTGGACTTCGCCCGCAAGCGTGGCGAGAAGTCCATGGCTCTGCGCCTG
GCTGGCGAGCTGCTGGATGCCGCTGAAGGCAAGGGCGCAGCAGTCAAGAAGCGTGAAGACGTGCACCGTATG
GCAGAGGCCAACAAGGCCTTCTCGCACTACCGGTTCTAA
Translation:
MPRRRVAAKREVLADPKYGSQILAKFMNHVMESGKKAVAERIVYGALDKVKERGKADPLETFEKALDAIAPL
VEVKSRRVGGATYQVPVEVRPSRRNALAMRWLVDFARKRGEKSMALRLAGELLDAAEGKGAAVKKREDVHRM
AEANKAFSHYRF*
AnnotationID:4491GeneID:4485
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 17:05:32
Gene Name:rpsG
Confidence Code:2
GeneProduct:30S ribosomal protein S7
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0049,pfam00177
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54164.1| (AE016858) ribosomal protein S7 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 156

 Score =  291 bits (746), Expect = 7e-79
 Identities = 149/156 (95%), Positives = 152/156 (97%)

>gb|AAN66080.1|AE016237_4 (AE016775) ribosomal protein S7 [Pseudomonas putida KT2440]
          Length = 156

 Score =  288 bits (736), Expect = 1e-77
 Identities = 147/156 (94%), Positives = 150/156 (96%)

>gb|AAM87528.1|AE014002_1 (AE014002) 30S ribosomal subunit protein S7 [Yersinia pestis KIM]
          Length = 156

 Score =  223 bits (567), Expect = 4e-58
 Identities = 112/156 (71%), Positives = 131/156 (83%)






 
Structural Features:
COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
CD-Length = 148 residues, 100.0% aligned
Score =  203 bits (518), Expect = 9e-54
Identities = 93/148 (62%), Positives = 117/148 (79%)

pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. 
CD-Length = 149 residues, 100.0% aligned
Score =  183 bits (467), Expect = 7e-48
Identities = 84/149 (56%), Positives = 113/149 (75%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8971




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26113




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36543




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4485_cdd.html


    		




 
URL:

















    ReferenceID:36763




  
Author/Investigator(s):
        Johanson U, Hughes D.





  
Title:
        Comparison of the complete sequence of the str operon in Salmonella typhimurium and Escherichia coli.




  
PubMed:
        1398129


MedLine:
        




    
Source:
Gene. 1992 Oct 12;120(1):93-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=93013025&dopt=Abstract

















    ReferenceID:36764




  
Author/Investigator(s):
        Post LE, Nomura M.





  
Title:
        DNA sequences from the str operon of Escherichia coli.




  
PubMed:
        6989816


MedLine:
        




    
Source:
J Biol Chem. 1980 May 25;255(10):4660-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=80182129&dopt=Abstract

















    ReferenceID:36766




  
Author/Investigator(s):
        Kenney TJ, Churchward G.





  
Title:
        Cloning and sequence analysis of the rpsL and rpsG genes of Mycobacterium smegmatis and characterization of mutations causing resistance to streptomycin.




  
PubMed:
        7928982


MedLine:
        




    
Source:
J Bacteriol. 1994 Oct;176(19):6153-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7928982









           
Homologs By Global Alignment 

           

       



     
Gene ID:4485
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6829
                           PA4267_tr
                           translation of PA4267
                           156
                           99.99
                           99.99
                           0
                           780.0
     

     
     
182745
                           gb|AAG07655.1|AE004842_4
                           (AE004842) 30S ribosomal protein S7 [Pseudomonas aeruginosa PAO1]
                           156
                           99.99
                           99.99
                           0
                           780.0
     

     
     
182746
                           gb|AAO54164.1|
                           (AE016858) ribosomal protein S7 [Pseudomonas syringae pv. tomato str. DC3000]
                           156
                           95.51
                           97.43
                           0
                           746.0
     

     
     
182747
                           gb|AAN66080.1|AE016237_4
                           (AE016775) ribosomal protein S7 [Pseudomonas putida KT2440]
                           156
                           94.23
                           96.15
                           0
                           736.0
     

     
     
182750
                           emb|CAC89062.1|
                           (AJ414141) 30S ribosomal protein S7 [Yersinia pestis CO92]
                           156
                           71.79
                           83.97
                           0
                           567.0
     

     






      

          
GC ORFID: 47487How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4267Glimmer Score: 

          
Start: 4198775Stop: 4198305

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4267 translation of PA4267Homolog Bit Score 305.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5180 (ORF: BLASTX 290.0), t_PA4267 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCAAGACGTCGTGTAGCGGCCAAGCGTGAAGTGCTGGCTGATCCGAAATACGGAAGCCAGATCCTGGCC 
AAGTTCATGAACCACGTGATGGAAAGCGGCAAGAAAGCCGTTGCCGAGCGTATCGTTTACGGTGCGCTGGAC 
AAGGTGAAGGAACGCGGCAAGGCCGATCCCCTGGAAACCTTCGAAAAAGCTCTCGATGCCATCGCTCCGCTG 
GTCGAAGTGAAGTCCCGCCGCGTAGGTGGTGCGACTTACCAGGTTCCGGTCGAAGTCCGTCCGTCCCGTCGT 
AATGCCCTGGCCATGCGTTGGCTGGTGGACTTCGCCCGCAAGCGTGGCGAGAAGTCCATGGCTCTGCGCCTG 
GCTGGCGAGCTGCTGGATGCCGCTGAAGGCAAGGGCGCAGCAGTCAAGAAGCGTGAAGACGTGCACCGTATG 
GCAGAGGCCAACAAGGCCTTCTCGCACTACCGGTTCTAA