ViewGene
Locus Name:
GeneID:
Location:

GeneID:4484
TrivialName: PA14_23100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23100
PAO1 Ortholog Locus:PA3180
Sequence Length:438
Protein Length:145
Start: 2003538
Stop: 2003101
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06568.1|AE004742_4 (AE004742) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 145/145 (100%), Positives = 145/145 (100%)
Sequence:
GTGCACGATGTCCCTCCCTTCAGCGGCGCCAAGCTGGCGCTGTTCTATGGCGACCACTTGGTCGTCTACAAA
CGCGACGAAAAACCCGGCATTCCCTTCCCCGGCTACTGGGACTTTCCCGGCGGCGGCCGCGAGGGCCTGGAG
ACGCCTGCCGAATGCGCCCTGCGCGAACTCGAGGAAGAGTTCTCCATCCGCCTGGAAGAACCTCGTATCGAA
TGGCAGCGACAGTATCCGAGCACCAGCGGCAGCGCGCCCTTCGCCTACTTCCTGGTGGCGCGCCTGGAGGAC
CGCGAATTCGAGGCCATCCGCTTCGGCGACGAAGGACAATACTGGCGATTGATGGAGGTGGACGCCTACCTC
GCGCATGCCATGGCCGTACCCTACCTGCAGAGCCGGCTCGGCGACTATCTGCGGGAACGCCGGCGCATCGGC
GAATAA
Translation:
MHDVPPFSGAKLALFYGDHLVVYKRDEKPGIPFPGYWDFPGGGREGLETPAECALRELEEEFSIRLEEPRIE
WQRQYPSTSGSAPFAYFLVARLEDREFEAIRFGDEGQYWRLMEVDAYLAHAMAVPYLQSRLGDYLRERRRIG
E*
AnnotationID:4490GeneID:4484
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 06:06:25
Gene Name:
Confidence Code:3
GeneProduct:putative 7,8-dihydro-8-oxoguanine-triphosphatase
Cell Localization:()
Synonyms:mutT
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:MutT/nudix family protein
Functional Category Confidence Code:5
COGs:pfam00293,COG1051
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK75856.1| (AE007471) MutT/nudix family protein [Streptococcus pneumoniae
           TIGR4]
          Length = 142

 Score =  130 bits (327), Expect = 2e-30
 Identities = 62/136 (45%), Positives = 87/136 (63%)

>gb|AAO10866.1|AE016805_123 (AE016805) NTP pyrophosphohydrolase [Vibrio vulnificus CMCP6]
          Length = 135

 Score =  129 bits (324), Expect = 5e-30
 Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

>gb|AAL00412.1| (AE008527) 7,8-dihydro-8-oxoguanine-triphosphatase [Streptococcus
           pneumoniae R6]
          Length = 142

 Score =  128 bits (321), Expect = 1e-29
 Identities = 62/136 (45%), Positives = 86/136 (63%)






 
Structural Features:
pfam00293, NUDIX, NUDIX domain.
CD-Length = 133 residues,  90.2% aligned
Score = 54.5 bits (130), Expect = 5e-09
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

COG1051, ADP-ribose pyrophosphatase 
[Nucleotide transport and metabolism]
CD-Length = 145 residues,  95.9% aligned
Score = 50.0 bits (119), Expect = 1e-07
Identities = 31/142 (21%), Positives = 47/142 (33%), Gaps = 3/142 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:15094




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26111




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32365




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4484_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4484
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6828
                           PA3180_tr
                           translation of PA3180
                           145
                           99.99
                           99.99
                           0
                           782.0
     

     
     
182737
                           gb|AAG06568.1|AE004742_4
                           (AE004742) hypothetical protein PA3180 [Pseudomonas aeruginosa PAO1]
                           145
                           99.31
                           99.99
                           0
                           779.0
     

     
     
182739
                           gb|AAO10866.1|AE016805_123
                           (AE016805) NTP pyrophosphohydrolase [Vibrio vulnificus CMCP6]
                           145
                           43.44
                           59.31
                           10
                           321.0
     

     
     
182741
                           dbj|BAC94518.1|
                           (AP005337) NTP pyrophosphohydrolase [Vibrio vulnificus YJ016]
                           145
                           43.44
                           57.93
                           10
                           318.0
     

     
     
182742
                           dbj|BAC94550.1|
                           (AP005337) NTP pyrophosphohydrolase [Vibrio vulnificus YJ016]
                           145
                           42.75
                           57.24
                           10
                           316.0
     

     






      

          
GC ORFID: 47486How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3180Glimmer Score: 

          
Start: 2950393Stop: 2950830

          
Length: 438


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3180 translation of PA3180Homolog Bit Score 305.0

          
Other Homologs:  t_PA3180 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCACGATGTCCCTCCCTTCAGCGGCGCCAAGCTGGCGCTGTTCTATGGCGACCACTTGGTCGTCTACAAA 
CGCGACGAAAAACCCGGCATTCCCTTCCCCGGCTACTGGGACTTTCCCGGCGGCGGCCGCGAGGGCCTGGAG 
ACGCCTGCCGAATGCGCCCTGCGCGAACTCGAGGAAGAGTTCTCCATCCGCCTGGAAGAACCTCGTATCGAA 
TGGCAGCGACAGTATCCGAGCACCAGCGGCAGCGCGCCCTTCGCCTACTTCCTGGTGGCGCGCCTGGAGGAC 
CGCGAATTCGAGGCCATCCGCTTCGGCGACGAAGGACAATACTGGCGATTGATGGAGGTGGACGCCTACCTC 
GCGCATGCCATGGCCGTACCCTACCTGCAGAGCCGGCTCGGCGACTATCTGCGGGAACGCCGGCGCATCGGC 
GAATAA