ViewGene
Locus Name:
GeneID:
Location:

GeneID:4482
TrivialName: PA14_45790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45790
PAO1 Ortholog Locus:PA1444
Sequence Length:474
Protein Length:157
Start: 4070678
Stop: 4070205
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04833.1|AE004574_4 (AE004574) flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1]
Identities = 157/157 (100%), Positives = 157/157 (100%)
Sequence:
ATGGCAGACGAAGAAAAAGTGACCACCGAGGAACAGGCACTGGCCGACGAATGGGCGGCGGCGCTGGCCGAG
GCGGGCGACGCCAGCCAGGACGACATCGATGCGCTGATGGCCCAGGGCGGCGCGACCCCCGTGGCGGAGCCG
AGCACCCCGCGGGCGCCGATGGAAGAGTTCGGCGCTTCGCCGAAGGCGCCGACCATTTCCGGCCTGGAGGGG
CCCAACCTGGATGTGATCCTGGACATCCCGGTGACCATCTCCATGGAAGTCGGGCATACCGACATCAGCATC
CGCAACCTGCTGCAGCTGAACCAGGGGTCGGTGATCGAACTCGATCGCCTGGCCGGCGAGCCGCTGGACGTA
CTGGTCAACGGCACCCTGATCGCCCACGGCGAGGTGGTGGTGGTGAACGAGAAGTTCGGCATCCGCCTGACC
GACGTGATCAGTCCCAGCGAACGCATCAAGAAGCTGCGCTGA
Translation:
MADEEKVTTEEQALADEWAAALAEAGDASQDDIDALMAQGGATPVAEPSTPRAPMEEFGASPKAPTISGLEG
PNLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLT
DVISPSERIKKLR*
AnnotationID:4488GeneID:4482
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 09:09:10
Gene Name:fliN
Confidence Code:1
GeneProduct:flagellar motor switch protein FliN
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1886,pfam01052
Secondary Functional Category(ies):chemotaxis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69935.1|AE016632_6 (AE016790) flagellar motor switch protein FliN [Pseudomonas putida
           KT2440]
          Length = 161

 Score =  218 bits (554), Expect = 1e-56
 Identities = 121/158 (76%), Positives = 131/158 (82%), Gaps = 4/158 (2%)

>gb|AAO55488.1| (AE016862) flagellar motor switch protein FliN [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 152

 Score =  216 bits (550), Expect = 4e-56
 Identities = 122/158 (77%), Positives = 131/158 (82%), Gaps = 7/158 (4%)

>gb|AAF95270.1| (AE004285) flagellar motor switch protein FliN [Vibrio cholerae]
          Length = 138

 Score =  166 bits (420), Expect = 4e-41
 Identities = 93/149 (62%), Positives = 111/149 (74%), Gaps = 16/149 (10%)








 
Structural Features:
COG1886, FliN, Flagellar motor switch/type III secretory pathway protein 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 136 residues, 100.0% aligned
Score =  102 bits (255), Expect = 2e-23
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 9/145 (6%)

pfam01052, SpoA, Surface presentation of antigens (SPOA) protein.
CD-Length = 77 residues, 100.0% aligned
Score = 85.6 bits (212), Expect = 3e-18
Identities = 37/77 (48%), Positives = 57/77 (74%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8965




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26107




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37386




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4488_cdd.html


    		




 
URL:

















    ReferenceID:37984




  
Author/Investigator(s):
        Simpson DA, Ramphal R, Lory S.





  
Title:
        Characterization of Pseudomonas aeruginosa fliO, a gene involved in flagellar biosynthesis and adherence.




  
PubMed:
        7622217


MedLine:
        




    
Source:
Infect Immun. 1995 Aug;63(8):2950-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7622217

















    ReferenceID:37985




  
Author/Investigator(s):
        Malakooti J, Komeda Y, Matsumura P.





  
Title:
        DNA sequence analysis, gene product identification, and localization of flagellar motor components of Escherichia coli.




  
PubMed:
        2651416


MedLine:
        




    
Source:
J Bacteriol. 1989 May;171(5):2728-34.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2651416









           
Homologs By Global Alignment 

           

       



     
Gene ID:4482
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6826
                           PA1444_tr
                           translation of PA1444
                           157
                           99.99
                           99.99
                           0
                           780.0
     

     
     
182647
                           gb|AAG04833.1|AE004574_4
                           (AE004574) flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1]
                           157
                           99.99
                           99.99
                           0
                           780.0
     

     
     
182648
                           gb|AAA79754.1|
                           (L39832) flagellar protein [Pseudomonas aeruginosa]
                           157
                           99.36
                           99.36
                           0
                           772.0
     

     
     
182651
                           gb|AAO55488.1|
                           (AE016862) flagellar motor switch protein FliN [Pseudomonas syringae pv. tomato str. DC3000]
                           158
                           77.84
                           83.54
                           7
                           558.0
     

     
     
182650
                           gb|AAN69935.1|AE016632_6
                           (AE016790) flagellar motor switch protein FliN [Pseudomonas putida KT2440]
                           165
                           74.54
                           80.00
                           12
                           563.0
     

     






      

          
GC ORFID: 47484How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1444Glimmer Score: 

          
Start: 883231Stop: 883704

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1444 translation of PA1444Homolog Bit Score 305.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7929 (ORF: BLASTX 217.0), t_PA1444 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAGACGAAGAAAAAGTGACCACCGAGGAACAGGCACTGGCCGACGAATGGGCGGCGGCGCTGGCCGAG 
GCGGGCGACGCCAGCCAGGACGACATCGATGCGCTGATGGCCCAGGGCGGCGCGACCCCCGTGGCGGAGCCG 
AGCACCCCGCGGGCGCCGATGGAAGAGTTCGGCGCTTCGCCGAAGGCGCCGACCATTTCCGGCCTGGAGGGG 
CCCAACCTGGATGTGATCCTGGACATCCCGGTGACCATCTCCATGGAAGTCGGGCATACCGACATCAGCATC 
CGCAACCTGCTGCAGCTGAACCAGGGGTCGGTGATCGAACTCGATCGCCTGGCCGGCGAGCCGCTGGACGTA 
CTGGTCAACGGCACCCTGATCGCCCACGGCGAGGTGGTGGTGGTGAACGAGAAGTTCGGCATCCGCCTGACC 
GACGTGATCAGTCCCAGCGAACGCATCAAGAAGCTGCGCTGA