ViewGene

Locus Name:
GeneID:
Location:

GeneID:4480
TrivialName: PA14_53860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53860
PAO1 Ortholog Locus:PA0803
Sequence Length:441
Protein Length:146
Start: 4775901
Stop: 4775461
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04192.1|AE004515_8 (AE004515) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 145/146 (99%), Positives = 146/146 (100%)
Sequence:
ATGCACACGCCCGCCAGCAACACCGTCGCCAGCGTCATTCCCTGCCTGCGTTACCGCGATGCGCCGGCCGCC
CTCGACTGGCTGTGCCGGACCTTTGGCTTCCAGCGCAAGCTGGTGGTGCCCGGCGAGGACGGACAGGTGCTC
CACGCCGAGTTGACCTACGCCAGCCCGAACGGCGCCAACGGCATGCTGATGCTCGGTTCGAGCGTCCGCGAC
AACGCCTACGGTCGGCTGATGCGGCACGTCGACGAAGCCGGCGGCAATACCCAGAGCCTCTACCTGGTGGTC
GCCGATCCCGACGCCCTGTTCCGCAGCGCCCAGGCCGCCGGCGCCGAGATCGTCATCGACATCAAGGACGAG
GACTACGGCGGTCGCGGCTTCACTTGCCGCGATCCGGAGGGCCACGTCTGGAGCTTCGGCAGCTATGATCCC
TGGGCATGA
Translation:
MHTPASNTVASVIPCLRYRDAPAALDWLCRTFGFQRKLVVPGEDGQVLHAELTYASPNGANGMLMLGSSVRD
NAYGRLMRHVDEAGGNTQSLYLVVADPDALFRSAQAAGAEIVIDIKDEDYGGRGFTCRDPEGHVWSFGSYDP
WA*
AnnotationID:4486GeneID:4480
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 17:05:12
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0803
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown].
     CD-Length = 136 residues,  99.3% aligned
     Score =  103 bits (257), Expect = 2e-23
Genomic Context:
Comment:
ReferenceID:8961
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26103
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4480

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6824 PA0803_tr translation of PA0803 146 99.31 99.99 0 782.0
182636 gb|AAG04192.1|AE004515_8 (AE004515) hypothetical protein PA0803 [Pseudomonas aeruginosa PAO1] 146 99.31 99.99 0 782.0
182637 emb|CAE40565.1| (BX640411) conseved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 148 58.78 71.62 10 445.0
182638 emb|CAE31345.1| (BX640439) conseved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 148 58.78 71.62 10 445.0
182639 emb|CAE40170.1| (BX640425) conseved hypothetical protein [Bordetella parapertussis] 148 58.78 71.62 10 445.0
GC ORFID: 47482How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0803Glimmer Score:
Start: 178006Stop: 178446
Length: 441
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0803 translation of PA0803Homolog Bit Score 305.0
Other Homologs: t_PA0803 (ORF: GLIMMER)
GC ORF Sequence
ATGCACACGCCCGCCAGCAACACCGTCGCCAGCGTCATTCCCTGCCTGCGTTACCGCGATGCGCCGGCCGCC
CTCGACTGGCTGTGCCGGACCTTTGGCTTCCAGCGCAAGCTGGTGGTGCCCGGCGAGGACGGACAGGTGCTC
CACGCCGAGTTGACCTACGCCAGCCCGAACGGCGCCAACGGCATGCTGATGCTCGGTTCGAGCGTCCGCGAC
AACGCCTACGGTCGGCTGATGCGGCACGTCGACGAAGCCGGCGGCAATACCCAGAGCCTCTACCTGGTGGTC
GCCGATCCCGACGCCCTGTTCCGCAGCGCCCAGGCCGCCGGCGCCGAGATCGTCATCGACATCAAGGACGAG
GACTACGGCGGTCGCGGCTTCACTTGCCGCGATCCGGAGGGCCACGTCTGGAGCTTCGGCAGCTATGATCCC
TGGGCATGA