ViewGene
Locus Name:
GeneID:
Location:

GeneID:448
TrivialName: PA14_21750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21750
PAO1 Ortholog Locus:PA3267
Sequence Length:1875
Protein Length:624
Start: 1891412
Stop: 1893286
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06655.1|AE004749_4 (AE004749) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 623/624 (99%), Positives = 623/624 (99%)
Sequence:
ATGACCCAACATTCGCAATTCGCCCTGCTGGGCAAGCGGCGTTTCCTGCCGTTCTTCATCACCCAGCTGCTC
GGCGCCTTCAACGACAACATCTTCAAGCAGTCGCTGATCCTCGCCATCCTCTATCACCTCAGCGTCAGCGGC
GACCGCAGTCTGCTGGTCAACCTCTGCGCGCTGCTGTTCATCCTGCCGTTCTTCCTGTTCTCGGCACTGGGC
GGACAGTTCGGCGAGAAGTACAACAAGGACGCGCTGATGCGCGCGCTGAAGCTGGCCGAGGTGGGCATCATG
CTGGTCGGCGCTGCCGGCTTCGTCTTCGGCAGCCTGCCGCTGATGTTCGTCGCGCTGTTCGCCATGGGCACC
CACTCGGCGCTATTTGGCCCGGTGAAGTATTCGATCCTGCCCCAGCACCTGCACGAGGACGAACTGGTCGGC
GGCAACGCGCTGGTGGAGATGGGCACCTTCCTGGCGATCCTGGCCGGCACCATCGGCGCCGGCGTGCTGATG
TCCCATGCGCATTACGCGGCGGCGGTGGCCACCGCGGTGGTGCTGGTGGCCGCCTGCGGCTACCTGGCCAGC
CGCGGCATTCCGCGAGCGGCGGCGGCGCTGCCGGGGTTGAAGCTCGACTGGAACATCTTCGCCCAGTCCTGG
AGCATCCTCCGCCTGGGGCTCGGCCAGCGCCCGGCGGTCTCGCGCTCGCTGGTGGGCAACTCCTGGTTCTGG
TTCCTCGGCGCGGTCTACCTGACGCAGATCCCGACCTTCGCCAAGGAATGGCTGCACGGCGACGAAAGCGTG
GTGACCCTGATCCTCACCGTGTTCTCGGTGGGCATCGCGCTGGGCTCGATGCTGTGCGAGAAGCTTTCCGGT
CGCAAGGTGGAGATCGGCCTGGTGCCGTTCGGCTCGATCGGCCTGACCGTCTTCGGCATCCTCCTCTGGTGG
CACGCCGGCGGCATTCCCCCAGGCGAGGCGCCCTACGACTGGCTGGCGGTGCTGCGCCACCATGAGACCTGG
GCGGTGCTGACCGACATCCTGTTCATCGGCATTTTCGGCGGCTTCTACATCGTACCGCTGTACGCCCTGATC
CAGGCGCGCACCGACGAAGACAAGCGGGCCCGGGTGATCGCCGCCAACAACATCCTCAACGCCCTGTTCATG
GTCGCCGCTGCGCTGGTCTCGATCCTCTTCCTCAGCGTCGCCAAGCTGTCGATCCCGCAGCTGTTCCTCGCC
CTGTCGCTGATGAACGTCGCGGTGAACGTGTACATCTTCAAGATCGTCCCGGAATTCACCATGCGCTTCCTG
GTCTGGCTGCTCAGCCACACCATGTACCGGGTCCGGCATGTGAATCTGGAGGCGATCCCGGACGAGGGAGCG
GCGGTGCTGGTGTGCAACCACGTCTCGTACGTGGACGCGCTGCTGATCGCCGGCTCGATCCGGCGGCCGGTG
CGCTTCGTCATGTACTACAGGATCTTCTCGCTGCCGGTGCTCAACTTCGTCTTCCGCACCGCCGGCGCGGTG
CCCATAGCGGCGCGCCACGAGGACGAAGGGATCTACGAACGCGCCTTCCAGCGCATCGCCGACTACCTGAGG
GACGGGGAGCTGGTGTGCATCTTCCCTGAAGGCAAGCTGACCGCCGACGGCGAGATGAACGAGTTCCGCGCC
GGGATCGAGCGGATCATCGAGGAAACCCCGGTTCCGGTGATCCCCATGGCGCTGCAGGGTCTGTGGGGCAGC
TTCTTCAGCCGCGACCCGAACAAGGGCTTCTTCCGCCGCCTGTGGTCGCGGGTAAGCCTGGTGGCCGGCGAA
TCGGTGGCGCCGGGGGCGGTGGAGCGCCTCGACCTGCAGGCGCGGGTGACGAGCTTGCGCGGCGAAGCTCGC
TGA
Translation:
MTQHSQFALLGKRRFLPFFITQLLGAFNDNIFKQSLILAILYHLSVSGDRSLLVNLCALLFILPFFLFSALG
GQFGEKYNKDALMRALKLAEVGIMLVGAAGFVFGSLPLMFVALFAMGTHSALFGPVKYSILPQHLHEDELVG
GNALVEMGTFLAILAGTIGAGVLMSHAHYAAAVATAVVLVAACGYLASRGIPRAAAALPGLKLDWNIFAQSW
SILRLGLGQRPAVSRSLVGNSWFWFLGAVYLTQIPTFAKEWLHGDESVVTLILTVFSVGIALGSMLCEKLSG
RKVEIGLVPFGSIGLTVFGILLWWHAGGIPPGEAPYDWLAVLRHHETWAVLTDILFIGIFGGFYIVPLYALI
QARTDEDKRARVIAANNILNALFMVAAALVSILFLSVAKLSIPQLFLALSLMNVAVNVYIFKIVPEFTMRFL
VWLLSHTMYRVRHVNLEAIPDEGAAVLVCNHVSYVDALLIAGSIRRPVRFVMYYRIFSLPVLNFVFRTAGAV
PIAARHEDEGIYERAFQRIADYLRDGELVCIFPEGKLTADGEMNEFRAGIERIIEETPVPVIPMALQGLWGS
FFSRDPNKGFFRRLWSRVSLVAGESVAPGAVERLDLQARVTSLRGEAR*
AnnotationID:457GeneID:448
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 18:06:16
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA3267
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00563,pfam01553
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57365.1| (AE016870) acyltransferase family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 624

 Score =  946 bits (2445), Expect = 0.0
 Identities = 461/624 (73%), Positives = 537/624 (86%)

>gb|AAN67321.1|AE016358_5 (AE016780) acyltransferase [Pseudomonas putida KT2440]
          Length = 661

 Score =  936 bits (2420), Expect = 0.0
 Identities = 461/625 (73%), Positives = 538/625 (86%), Gaps = 1/625 (0%)

>gb|AAO11482.1|AE016807_201 (AE016807) 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio
           vulnificus CMCP6]
          Length = 624

 Score =  578 bits (1491), Expect = e-164
 Identities = 310/633 (48%), Positives = 415/633 (65%), Gaps = 18/633 (2%)








 
Structural Features:
smart00563, PlsC, Phosphate acyltransferases
CD-Length = 118 residues, 100.0% aligned
Score = 86.6 bits (214), Expect = 8e-18
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

pfam01553, Acyltransferase, Acyltransferase. 
CD-Length = 132 residues,  99.2% aligned
Score = 81.9 bits (202), Expect = 2e-16
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 6/133 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:899




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32276




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:448_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:448
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
766
                           PA3267_tr
                           translation of PA3267
                           624
                           99.83
                           99.83
                           0
                           3178.0
     

     
     
33782
                           gb|AAG06655.1|AE004749_4
                           (AE004749) hypothetical protein PA3267 [Pseudomonas aeruginosa PAO1]
                           624
                           99.83
                           99.83
                           0
                           3178.0
     

     
     
33783
                           gb|AAO57365.1|
                           (AE016870) acyltransferase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           624
                           73.87
                           86.05
                           0
                           2445.0
     

     
     
33784
                           gb|AAN67321.1|AE016358_5
                           (AE016780) acyltransferase [Pseudomonas putida KT2440]
                           661
                           69.74
                           81.39
                           37
                           2422.0
     

     
     
33785
                           emb|CAD15266.1|
                           (AL646065) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           637
                           51.33
                           68.75
                           15
                           1631.0
     

     






      

          
GC ORFID: 43450How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3267Glimmer Score: 

          
Start: 3062519Stop: 3060645

          
Length: 1875


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3267 translation of PA3267Homolog Bit Score 1228.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1751 (ORF: BLASTX 949.0), t_PA3267 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAACATTCGCAATTCGCCCTGCTGGGCAAGCGGCGTTTCCTGCCGTTCTTCATCACCCAGCTGCTC 
GGCGCCTTCAACGACAACATCTTCAAGCAGTCGCTGATCCTCGCCATCCTCTATCACCTCAGCGTCAGCGGC 
GACCGCAGTCTGCTGGTCAACCTCTGCGCGCTGCTGTTCATCCTGCCGTTCTTCCTGTTCTCGGCACTGGGC 
GGACAGTTCGGCGAGAAGTACAACAAGGACGCGCTGATGCGCGCGCTGAAGCTGGCCGAGGTGGGCATCATG 
CTGGTCGGCGCTGCCGGCTTCGTCTTCGGCAGCCTGCCGCTGATGTTCGTCGCGCTGTTCGCCATGGGCACC 
CACTCGGCGCTATTTGGCCCGGTGAAGTATTCGATCCTGCCCCAGCACCTGCACGAGGACGAACTGGTCGGC 
GGCAACGCGCTGGTGGAGATGGGCACCTTCCTGGCGATCCTGGCCGGCACCATCGGCGCCGGCGTGCTGATG 
TCCCATGCGCATTACGCGGCGGCGGTGGCCACCGCGGTGGTGCTGGTGGCCGCCTGCGGCTACCTGGCCAGC 
CGCGGCATTCCGCGAGCGGCGGCGGCGCTGCCGGGGTTGAAGCTCGACTGGAACATCTTCGCCCAGTCCTGG 
AGCATCCTCCGCCTGGGGCTCGGCCAGCGCCCGGCGGTCTCGCGCTCGCTGGTGGGCAACTCCTGGTTCTGG 
TTCCTCGGCGCGGTCTACCTGACGCAGATCCCGACCTTCGCCAAGGAATGGCTGCACGGCGACGAAAGCGTG 
GTGACCCTGATCCTCACCGTGTTCTCGGTGGGCATCGCGCTGGGCTCGATGCTGTGCGAGAAGCTTTCCGGT 
CGCAAGGTGGAGATCGGCCTGGTGCCGTTCGGCTCGATCGGCCTGACCGTCTTCGGCATCCTCCTCTGGTGG 
CACGCCGGCGGCATTCCCCCAGGCGAGGCGCCCTACGACTGGCTGGCGGTGCTGCGCCACCATGAGACCTGG 
GCGGTGCTGACCGACATCCTGTTCATCGGCATTTTCGGCGGCTTCTACATCGTACCGCTGTACGCCCTGATC 
CAGGCGCGCACCGACGAAGACAAGCGGGCCCGGGTGATCGCCGCCAACAACATCCTCAACGCCCTGTTCATG 
GTCGCCGCTGCGCTGGTCTCGATCCTCTTCCTCAGCGTCGCCAAGCTGTCGATCCCGCAGCTGTTCCTCGCC 
CTGTCGCTGATGAACGTCGCGGTGAACGTGTACATCTTCAAGATCGTCCCGGAATTCACCATGCGCTTCCTG 
GTCTGGCTGCTCAGCCACACCATGTACCGGGTCCGGCATGTGAATCTGGAGGCGATCCCGGACGAGGGAGCG 
GCGGTGCTGGTGTGCAACCACGTCTCGTACGTGGACGCGCTGCTGATCGCCGGCTCGATCCGGCGGCCGGTG 
CGCTTCGTCATGTACTACAGGATCTTCTCGCTGCCGGTGCTCAACTTCGTCTTCCGCACCGCCGGCGCGGTG 
CCCATAGCGGCGCGCCACGAGGACGAAGGGATCTACGAACGCGCCTTCCAGCGCATCGCCGACTACCTGAGG 
GACGGGGAGCTGGTGTGCATCTTCCCTGAAGGCAAGCTGACCGCCGACGGCGAGATGAACGAGTTCCGCGCC 
GGGATCGAGCGGATCATCGAGGAAACCCCGGTTCCGGTGATCCCCATGGCGCTGCAGGGTCTGTGGGGCAGC 
TTCTTCAGCCGCGACCCGAACAAGGGCTTCTTCCGCCGCCTGTGGTCGCGGGTAAGCCTGGTGGCCGGCGAA 
TCGGTGGCGCCGGGGGCGGTGGAGCGCCTCGACCTGCAGGCGCGGGTGACGAGCTTGCGCGGCGAAGCTCGC 
TGA