ViewGene
Locus Name:
GeneID:
Location:

GeneID:4479
TrivialName: PA14_59930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59930
PAO1 Ortholog Locus:
Sequence Length:444
Protein Length:147
Start: 5336611
Stop: 5337054
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84150.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 147/147 (100%), Positives = 147/147 (100%)
Sequence:
ATGCAACAGCAGACTTGGACTAACCCCCTTCTTCGTCTCTGCGCCGGCCTGGCCTGCGCGCTGACCCTGGCA
GCGTGCTCCACCAGCAAGGAGGAGATGCTGCCCCACGGCGAGGCCAACATGCTCGACGTCTGGGAGCGAGGT
GCGACCAGCTCGATAGGCAACAGCCGTGGCCGGCTGCTCCTCGATGCCAGGCAAACGCTGCGGCGCCCAATC
GATCCGCAGCAGGATGCCTCCGCGAATGACCAGGCCGACTACACCCGCACGGCCAGCAACGAGATCCACAGT
CAGTTCAAACGACTGCCCAATCCCGACCTGGTGATGTATGTGTTCCCGCACCTGGCCGGCAGCGATCCCGCC
CCGGTACCGGGCTACACCACCGTGTTCCCCTTCTACCAGCGAGTCCAGTACGCCATGCCGGGCGAACGCACG
GAGGACTATTGA
Translation:
MQQQTWTNPLLRLCAGLACALTLAACSTSKEEMLPHGEANMLDVWERGATSSIGNSRGRLLLDARQTLRRPI
DPQQDASANDQADYTRTASNEIHSQFKRLPNPDLVMYVFPHLAGSDPAPVPGYTTVFPFYQRVQYAMPGERT
EDY*
AnnotationID:4485GeneID:4479
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 00:12:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical peotein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8959




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26101




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4479
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
182627
                           gb|AAP84150.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           147
                           99.99
                           99.99
                           0
                           783.0
     

     
     
182628
                           gb|AAO54395.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           151
                           66.88
                           74.17
                           4
                           515.0
     

     
     
182631
                           gb|AAN62280.1|AF440524_67
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           148
                           59.45
                           70.27
                           10
                           443.0
     

     
     
182630
                           emb|CAE92912.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           155
                           57.41
                           69.03
                           17
                           446.0
     

     
     
182629
                           gb|AAN62142.1|AF440523_49
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           151
                           56.95
                           71.52
                           9
                           446.0
     

     






      

          
GC ORFID: 47481How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL023Glimmer Score: 

          
Start: 4600290Stop: 4600733

          
Length: 444


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL023 147 Homolog: STY4571 / Putative lipoprotein / S.enterica subsp. enterica serovar Typhi / CT18 (CAD09346) translation of RL023Homolog Bit Score 306.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1643 (ORF: BLASTX 202.0), t_RL023 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACAGCAGACTTGGACTAACCCCCTTCTTCGTCTCTGCGCCGGCCTGGCCTGCGCGCTGACCCTGGCA 
GCGTGCTCCACCAGCAAGGAGGAGATGCTGCCCCACGGCGAGGCCAACATGCTCGACGTCTGGGAGCGAGGT 
GCGACCAGCTCGATAGGCAACAGCCGTGGCCGGCTGCTCCTCGATGCCAGGCAAACGCTGCGGCGCCCAATC 
GATCCGCAGCAGGATGCCTCCGCGAATGACCAGGCCGACTACACCCGCACGGCCAGCAACGAGATCCACAGT 
CAGTTCAAACGACTGCCCAATCCCGACCTGGTGATGTATGTGTTCCCGCACCTGGCCGGCAGCGATCCCGCC 
CCGGTACCGGGCTACACCACCGTGTTCCCCTTCTACCAGCGAGTCCAGTACGCCATGCCGGGCGAACGCACG 
GAGGACTATTGA