ViewGene
Locus Name:
GeneID:
Location:

GeneID:4478
TrivialName: PA14_65700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65700
PAO1 Ortholog Locus:PA4970
Sequence Length:459
Protein Length:152
Start: 5851502
Stop: 5851044
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08355.1|AE004910_2 (AE004910) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/152 (99%), Positives = 151/152 (99%)
Sequence:
ATGGGCCTGAACCTGCTGCGCGAGCGCTACCGGGTCGACCTGGCCAGCCTGCAGGCGACCTGTGAAGCGAAC
TACGCGCGGCTCATGCGCCTGCTCCCGGACATGCGCGAGGCACAGGCCTCGCGCCGGGTCGCGCTGAGCGAA
GGGGAGCGGCTGCTCGGCGTCCTGGCGCTGGAAGTGACCGAGGCCTGCCCGTACACCACCACCCTGCAGGTG
CGCCAGGAACTGGGCCTGCCCTGGTTGCCGGCGCCGCGGCTGGAAGTGCGGGTCTACCACGATGCACGGATG
GCCGAGGTGATCGGCGCCGAACAGGCGCGGCGGCTGATGGCGATCTATCCCTACCCGAACCAGGCGATGCAC
CAGCCCGACGAGAAGAACCAGCTCAACCTGTTCCTCGGCGAGTGGCTCGCCCACTGTCTGGCCTGCGGCCAC
GAGATGGTGCCGGTGGCCCAGCGCTGA
Translation:
MGLNLLRERYRVDLASLQATCEANYARLMRLLPDMREAQASRRVALSEGERLLGVLALEVTEACPYTTTLQV
RQELGLPWLPAPRLEVRVYHDARMAEVIGAEQARRLMAIYPYPNQAMHQPDEKNQLNLFLGEWLAHCLACGH
EMVPVAQR*
AnnotationID:4484GeneID:4478
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 17:05:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4970
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8957




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26099




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35049




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4478_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4478
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6823
                           PA4970_tr
                           translation of PA4970
                           152
                           99.34
                           99.34
                           0
                           783.0
     

     
     
182619
                           gb|AAG08355.1|AE004910_2
                           (AE004910) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           152
                           99.34
                           99.34
                           0
                           783.0
     

     
     
182621
                           gb|AAO58400.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           152
                           76.31
                           82.89
                           2
                           606.0
     

     
     
182620
                           gb|AAN70485.1|AE016690_1
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           152
                           73.02
                           82.89
                           2
                           608.0
     

     
     
182622
                           gb|AAP70396.1|
                           (AY236225) Uvs098 [uncultured bacterium]
                           152
                           71.05
                           81.57
                           2
                           579.0
     

     






      

          
GC ORFID: 47480How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4970Glimmer Score: 

          
Start: 5115184Stop: 5114726

          
Length: 459


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4970 translation of PA4970Homolog Bit Score 306.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3407 (ORF: BLASTX 238.0)

          
GC ORF Sequence

           
ATGGGCCTGAACCTGCTGCGCGAGCGCTACCGGGTCGACCTGGCCAGCCTGCAGGCGACCTGTGAAGCGAAC 
TACGCGCGGCTCATGCGCCTGCTCCCGGACATGCGCGAGGCACAGGCCTCGCGCCGGGTCGCGCTGAGCGAA 
GGGGAGCGGCTGCTCGGCGTCCTGGCGCTGGAAGTGACCGAGGCCTGCCCGTACACCACCACCCTGCAGGTG 
CGCCAGGAACTGGGCCTGCCCTGGTTGCCGGCGCCGCGGCTGGAAGTGCGGGTCTACCACGATGCACGGATG 
GCCGAGGTGATCGGCGCCGAACAGGCGCGGCGGCTGATGGCGATCTATCCCTACCCGAACCAGGCGATGCAC 
CAGCCCGACGAGAAGAACCAGCTCAACCTGTTCCTCGGCGAGTGGCTCGCCCACTGTCTGGCCTGCGGCCAC 
GAGATGGTGCCGGTGGCCCAGCGCTGA