ViewGene

Locus Name:
GeneID:
Location:

GeneID:4477
TrivialName: PA14_62900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62900
PAO1 Ortholog Locus:PA4755
Sequence Length:477
Protein Length:158
Start: 5611796
Stop: 5611320
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08141.1|AE004889_4 (AE004889) transcription elongation factor GreA [Pseudomonas aeruginosa PAO1]
Identities = 158/158 (100%), Positives = 158/158 (100%)
Sequence:
ATGAGCAAGTTCCCCATGACCGTCCAGGGCGCCCGCGCCCtgGaAGAAGAAGTGAAACACCTGAAGGGCGTG
CTGCGCCCGCAGATCAGCCAGGCCATCGCCGAAGCGCGTGAACTGGGCGAcCTCAAGGAAAACGCCGAGTAC
CATGCGGCGCGCGAACAGCAGGGCATGGTCGAGGCGCGTATCCGCGACATCGAGGCCAAGCTGTCCAACGCC
CAGGTCATCGATGTCACCGCCATCCCGCACAGCGGCAAGGTGATCTTCGGCACCACCGTCGACATCGCCAAC
GTCGAGACCGACGAGACCGTGACCTACCAGATCGTCGGCGACGACGAGGCGGATATCAAGGGTGGCAAGATC
TCGGTGAATTCGCCGATCGCCCGTGCGCTGATTGGCAAGACCGAAGGCGATGCCGTGCTGGTGAGAACCCCG
GGCGGCGACGTCGAGTACGAGATCGTCGAGGTTCGCCATATCTAA
Translation:
MSKFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEARIRDIEAKLSNA
QVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKISVNSPIARALIGKTEGDAVLVRTP
GGDVEYEIVEVRHI*
AnnotationID:4483GeneID:4477
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 09:09:17
Gene Name:greA
Confidence Code:2
GeneProduct:transcription elongation factor GreA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0782,pfam03449,pfam01272
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57948.1| (AE016872) transcription elongation factor GreA [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 158

 Score =  244 bits (623), Expect = 1e-64
 Identities = 123/158 (77%), Positives = 138/158 (87%)

>gb|AAN70294.1|AE016670_4 (AE016791) transcription elongation factor GreA [Pseudomonas putida
           KT2440]
          Length = 160

 Score =  236 bits (601), Expect = 5e-62
 Identities = 118/158 (74%), Positives = 136/158 (86%)

>gb|AAN82378.1|AE016767_138 (AE016767) Transcription elongation factor greA [Escherichia coli
           CFT073]
          Length = 158

 Score =  209 bits (532), Expect = 5e-54
 Identities = 103/158 (65%), Positives = 127/158 (80%)

Structural Features:
COG0782, GreA, Transcription elongation factor [Transcription]
CD-Length = 151 residues,  98.0% aligned
Score =  160 bits (406), Expect = 7e-41
Identities = 83/150 (55%), Positives = 106/150 (70%), Gaps = 2/150 (1%)

pfam03449, GreA_GreB_N, Prokaryotic transcription elongation factor, 
GreA/GreB, N-terminal domain. 
CD-Length = 74 residues, 100.0% aligned
Score = 93.1 bits (231), Expect = 1e-20
Identities = 39/74 (52%), Positives = 54/74 (72%)

pfam01272, GreA_GreB, Prokaryotic transcription elongation factor, GreA/GreB, 
C-terminal domain. 
CD-Length = 78 residues,  96.2% aligned
Score = 90.8 bits (225), Expect = 6e-20
Identities = 43/75 (57%), Positives = 53/75 (70%)
Genomic Context:
Comment:
ReferenceID:8955
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26097
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37660
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4477_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4477

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6822 PA4755_tr translation of PA4755 158 99.99 99.99 0 784.0
182512 gb|AAG08141.1|AE004889_4 (AE004889) transcription elongation factor GreA [Pseudomonas aeruginosa PAO1] 158 99.99 99.99 0 784.0
182513 gb|AAO57948.1| (AE016872) transcription elongation factor GreA [Pseudomonas syringae pv. tomato str. DC3000] 158 77.84 87.34 0 623.0
182514 gb|AAN70294.1|AE016670_4 (AE016791) transcription elongation factor GreA [Pseudomonas putida KT2440] 160 73.75 85.00 2 601.0
182518 emb|CAE16910.1| (BX571874) transcription elongation factor greA (transcript cleavage factor) [Photorhabdus luminescens subsp. laumondii TTO1] 158 68.35 79.74 0 537.0
GC ORFID: 47479How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4755Glimmer Score:
Start: 4875476Stop: 4875000
Length: 477
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4755 translation of PA4755Homolog Bit Score 306.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5482 (ORF: BLASTX 246.0), t_PA4755 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAAGTTCCCCATGACCGTCCAGGGCGCCCGCGCCCtgGaAGAAGAAGTGAAACACCTGAAGGGCGTG
CTGCGCCCGCAGATCAGCCAGGCCATCGCCGAAGCGCGTGAACTGGGCGAcCTCAAGGAAAACGCCGAGTAC
CATGCGGCGCGCGAACAGCAGGGCATGGTCGAGGCGCGTATCCGCGACATCGAGGCCAAGCTGTCCAACGCC
CAGGTCATCGATGTCACCGCCATCCCGCACAGCGGCAAGGTGATCTTCGGCACCACCGTCGACATCGCCAAC
GTCGAGACCGACGAGACCGTGACCTACCAGATCGTCGGCGACGACGAGGCGGATATCAAGGGTGGCAAGATC
TCGGTGAATTCGCCGATCGCCCGTGCGCTGATTGGCAAGACCGAAGGCGATGCCGTGCTGGTGAGAACCCCG
GGCGGCGACGTCGAGTACGAGATCGTCGAGGTTCGCCATATCTAA