ViewGene
Locus Name:
GeneID:
Location:

GeneID:4475
TrivialName: PA14_60410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60410
PAO1 Ortholog Locus:PA4564
Sequence Length:465
Protein Length:154
Start: 5385933
Stop: 5385469
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07952.1|AE004870_3 (AE004870) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/154 (100%), Positives = 154/154 (100%)
Sequence:
ATGCGCAAGCTCGCGGGGTTGCTGGGTGGTCTGCTGCTGTTGCCGGCGCTTGCCGGGGCGGAGGAGATCGGC
GAGGTTTCCACGGTGTTCAAGTGGGTCGGGCCGAACGACAAGATTGTCGTCGAGGCTTTCGACGATCCTAAG
GTGCAAGGCGTGACCTGCTATCTGTCGCGCGCCAAGACCGGTGGGGTCAAGGGCGGTCTGGGGCTGGCGGAG
GATCGCGCCGAGGCGTCGATCGCCTGTCGCCAGGTGGGGCCGATCCAGTTCAGTGGCGAACTCAAGGATGGC
GAAGAGGTGTTCAAGCAGCGCACTTCGCTGGTGTTCAAAAGCATGCAGGTGGTGCGCTTCTTCGATCGCAAG
CGCAATGCCTTGGTCTATCTGGTCTACAGCGACCGGGTGATCGAGGGCAGTCCGCAGAACGCGGTGACGGCG
ATTCCCCTCATGCCCTGGCCGACCGCTCGCTGA
Translation:
MRKLAGLLGGLLLLPALAGAEEIGEVSTVFKWVGPNDKIVVEAFDDPKVQGVTCYLSRAKTGGVKGGLGLAE
DRAEASIACRQVGPIQFSGELKDGEEVFKQRTSLVFKSMQVVRFFDRKRNALVYLVYSDRVIEGSPQNAVTA
IPLMPWPTAR*
AnnotationID:4481GeneID:4475
AnnotatorUID: diggins
Modification Date/Time: 2006-02-06 22:10:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4564
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54343.1| (AE016858) creA protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 156

 Score =  258 bits (658), Expect = 1e-68
 Identities = 127/153 (83%), Positives = 139/153 (90%)

>gb|AAN83904.1|AE016772_82 (AE016772) CreA protein [Escherichia coli CFT073]
          Length = 157

 Score =  205 bits (521), Expect = 8e-53
 Identities = 98/144 (68%), Positives = 123/144 (85%), Gaps = 4/144 (2%)

>gb|AAA24373.1| (M13608) 17 kd protein [Escherichia coli]
          Length = 157

 Score =  205 bits (521), Expect = 8e-53
 Identities = 98/144 (68%), Positives = 123/144 (85%), Gaps = 4/144 (2%)

>gb|AAL23402.1| (AE008916) putative periplasmic protein [Salmonella typhimurium
           LT2]
          Length = 157

 Score =  199 bits (506), Expect = 5e-51
 Identities = 95/144 (65%), Positives = 121/144 (84%), Gaps = 4/144 (2%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8951




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26093




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31649




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4475_cdd.html


    		




 
URL:

















    ReferenceID:38329




  
Author/Investigator(s):
        Tonukari NJ, Scott-Craig JS, Walton JD.





  
Title:
        Isolation of the carbon catabolite repressor (CREA) gene from the plant-pathogenic fungus Cochliobolus carbonum.




  
PubMed:
        12825351


MedLine:
        




    
Source:
DNA Seq. 2003 Apr;14(2):103-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12825351&query_hl=8&itool=pubmed_docsum









           
Homologs By Global Alignment 

           

       



     
Gene ID:4475
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6820
                           PA4564_tr
                           translation of PA4564
                           154
                           99.99
                           99.99
                           0
                           784.0
     

     
     
182412
                           gb|AAG07952.1|AE004870_3
                           (AE004870) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           154
                           99.99
                           99.99
                           0
                           784.0
     

     
     
182413
                           gb|AAO54343.1|
                           (AE016858) creA protein [Pseudomonas syringae pv. tomato str. DC3000]
                           156
                           81.41
                           89.10
                           2
                           656.0
     

     
     
182414
                           gb|AAN66317.1|AE016260_3
                           (AE016776) creA protein [Pseudomonas putida KT2440]
                           155
                           79.35
                           88.38
                           3
                           635.0
     

     
     
182422
                           gb|AAA24373.1|
                           (M13608) 17 kd protein [Escherichia coli]
                           159
                           62.89
                           79.87
                           7
                           514.0
     

     






      

          
GC ORFID: 47477How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4564Glimmer Score: 

          
Start: 4649612Stop: 4649148

          
Length: 465


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4564 translation of PA4564Homolog Bit Score 306.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3530 (ORF: BLASTX 257.0)

          
GC ORF Sequence

           
ATGCGCAAGCTCGCGGGGTTGCTGGGTGGTCTGCTGCTGTTGCCGGCGCTTGCCGGGGCGGAGGAGATCGGC 
GAGGTTTCCACGGTGTTCAAGTGGGTCGGGCCGAACGACAAGATTGTCGTCGAGGCTTTCGACGATCCTAAG 
GTGCAAGGCGTGACCTGCTATCTGTCGCGCGCCAAGACCGGTGGGGTCAAGGGCGGTCTGGGGCTGGCGGAG 
GATCGCGCCGAGGCGTCGATCGCCTGTCGCCAGGTGGGGCCGATCCAGTTCAGTGGCGAACTCAAGGATGGC 
GAAGAGGTGTTCAAGCAGCGCACTTCGCTGGTGTTCAAAAGCATGCAGGTGGTGCGCTTCTTCGATCGCAAG 
CGCAATGCCTTGGTCTATCTGGTCTACAGCGACCGGGTGATCGAGGGCAGTCCGCAGAACGCGGTGACGGCG 
ATTCCCCTCATGCCCTGGCCGACCGCTCGCTGA