ViewGene

Locus Name:
GeneID:
Location:

GeneID:4474
TrivialName: PA14_11910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11910
PAO1 Ortholog Locus:PA4015
Sequence Length:456
Protein Length:151
Start: 1031769
Stop: 1031314
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07402.1|AE004818_8 (AE004818) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/151 (100%), Positives = 151/151 (100%)
Sequence:
ATGCCATTCGTACCCGTAGCAGCGCTCAAGGACTATGTCGGCAAGGATCTCGGCCATTCCGAATGGCTCACC
ATCGACCAGGAGCGGGTCGACCAGTTCGCCGAATGCACCGGCGACCACCAGTTCATCCACGTCGATCCGGAG
AAGGCGGCGAAGACGCCCTTCGGCGGCACCATCGCCCACGGTTTCCTGTCCCTGTCGCTGATCCCGAAGCTG
ATGGAAGGCCTGCTGGTGCTTCCCGAAGGACTGAAGATGGCGGTCAACTACGGCCTCGATACGGTGCGCTTC
ATCCAGCCGGTGCGGGTCGGCTCGCGGGTCCGCCTGGGCCTGACCCTGCTCGACGTCAACGAGAAGAATCCC
GGCCAGTGGCTGATCAAGGCGCGCGCCACCCTGGAGATCGAAGGCCAGGAGAAACCCGCCTACATCGCCGAG
ACCCTCAGCCTCTGCTTCGTCTGA
Translation:
MPFVPVAALKDYVGKDLGHSEWLTIDQERVDQFAECTGDHQFIHVDPEKAAKTPFGGTIAHGFLSLSLIPKL
MEGLLVLPEGLKMAVNYGLDTVRFIQPVRVGSRVRLGLTLLDVNEKNPGQWLIKARATLEIEGQEKPAYIAE
TLSLCFV*
AnnotationID:4480GeneID:4474
AnnotatorUID: diggins
Modification Date/Time: 2006-02-06 22:10:42
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4015
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2030,pfam01575
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|11738 COG2030, MaoC, Acyl dehydratase [Lipid metabolism]
Length = 159
Score =  123 bits (310), Expect = 2e-29
Identities = 50/138 (36%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Genomic Context:
Comment:
ReferenceID:8949
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26091
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38328
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4474_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4474

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6819 PA4015_tr translation of PA4015 151 99.99 99.99 0 785.0
182381 gb|AAG07402.1|AE004818_8 (AE004818) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 151 99.99 99.99 0 785.0
182382 dbj|BAC44835.1| (AB075927) (R)-specific enoyl-CoA hydratase [Pseudomonas aeruginosa] 151 99.99 99.99 0 785.0
182383 gb|AAN70386.1|AE016680_6 (AE016792) MaoC domain protein [Pseudomonas putida KT2440] 151 78.14 88.07 0 616.0
182384 gb|AAO54276.1| (AE016858) MaoC-like domain protein [Pseudomonas syringae pv. tomato str. DC3000] 151 75.49 87.41 0 613.0
GC ORFID: 47476How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4015Glimmer Score:
Start: 3922169Stop: 3922624
Length: 456
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4015 translation of PA4015Homolog Bit Score 306.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3619 (ORF: BLASTX 240.0), t_PA4015 (ORF: GLIMMER)
GC ORF Sequence
ATGCCATTCGTACCCGTAGCAGCGCTCAAGGACTATGTCGGCAAGGATCTCGGCCATTCCGAATGGCTCACC
ATCGACCAGGAGCGGGTCGACCAGTTCGCCGAATGCACCGGCGACCACCAGTTCATCCACGTCGATCCGGAG
AAGGCGGCGAAGACGCCCTTCGGCGGCACCATCGCCCACGGTTTCCTGTCCCTGTCGCTGATCCCGAAGCTG
ATGGAAGGCCTGCTGGTGCTTCCCGAAGGACTGAAGATGGCGGTCAACTACGGCCTCGATACGGTGCGCTTC
ATCCAGCCGGTGCGGGTCGGCTCGCGGGTCCGCCTGGGCCTGACCCTGCTCGACGTCAACGAGAAGAATCCC
GGCCAGTGGCTGATCAAGGCGCGCGCCACCCTGGAGATCGAAGGCCAGGAGAAACCCGCCTACATCGCCGAG
ACCCTCAGCCTCTGCTTCGTCTGA