ViewGene
Locus Name:
GeneID:
Location:

GeneID:4473
TrivialName: PA14_19380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19380
PAO1 Ortholog Locus:PA3458
Sequence Length:474
Protein Length:157
Start: 1675192
Stop: 1675665
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06846.1|AE004766_7 (AE004766) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 157/157 (100%), Positives = 157/157 (100%)
Sequence:
ATGGTTGAAAGTAATAAGACCGCTGCCGATACCTATTCGCTCGCTATTTTCCGCGCCATCCGCCGCCTCCAG
CAGGCCGCTGAAATCCACTCCAAGCGTCTCAGCCGATACGGCGGCCTGACCCCGCTGCAATTGCTGATCCTG
CATGTCCTGGCGGTGGAGGGAGAACTGACCGCGACGCAACTGGCCAAGCTGGTCAGCCTGTCCCAGGCATCG
CTCTCCGGCGTGCTCGACCGCCTCGAAGGACGCGGCCTGCTCTATCGTCGGCGCGACGAACAGGACCGGCGC
AAGTCCTGGCTGCACCTCGACCCGGCCGGCCACGAAGCCCTGGCGGAAGCGCCGCCGCTATTGCCGGAGTAC
GTGATCGAGCGCTTCGCCGCGTTGCCCGAGTGGGAGCGCCACGGCCTGCTGGCCGCGCTGCTGCGCGCGGCC
GACCTGTTCGGCCTGCCGGAAGAGGACGTCGAAGAAGAGTGA
Translation:
MVESNKTAADTYSLAIFRAIRRLQQAAEIHSKRLSRYGGLTPLQLLILHVLAVEGELTATQLAKLVSLSQAS
LSGVLDRLEGRGLLYRRRDEQDRRKSWLHLDPAGHEALAEAPPLLPEYVIERFAALPEWERHGLLAALLRAA
DLFGLPEEDVEEE*
AnnotationID:4479GeneID:4473
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 21:09:45
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA3458
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative multiple antibiotic resistance protein
Functional Category Confidence Code:5
COGs:smart00347,pfam01047,COG1846
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC60169.1| (AP005079) transcriptional regulator, MarR family [Vibrio
           parahaemolyticus]
          Length = 158

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 52/136 (38%), Positives = 83/136 (61%)

>gb|AAO10621.1|AE016804_131 (AE016804) Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 161

 Score = 92.4 bits (228), Expect = 8e-19
 Identities = 50/136 (36%), Positives = 83/136 (61%)








 
Structural Features:
smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
CD-Length = 101 residues,  94.1% aligned
Score = 68.7 bits (168), Expect = 3e-13
Identities = 35/95 (36%), Positives = 54/95 (56%)

pfam01047, MarR, MarR family.
CD-Length = 104 residues,  97.1% aligned
Score = 70.6 bits (173), Expect = 8e-14
Identities = 38/101 (37%), Positives = 56/101 (55%)

COG1846, MarR, Transcriptional regulators [Transcription]
CD-Length = 126 residues,  99.2% aligned
Score = 63.0 bits (152), Expect = 1e-11







   
Genomic Context:






   
Comment:


















    ReferenceID:8947




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26089




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32112




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4473_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4473
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6818
                           PA3458_tr
                           translation of PA3458
                           157
                           99.99
                           99.99
                           0
                           783.0
     

     
     
182380
                           gb|AAG06846.1|AE004766_7
                           (AE004766) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           157
                           99.99
                           99.99
                           0
                           783.0
     

     






      

          
GC ORFID: 47475How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3458Glimmer Score: 

          
Start: 3278740Stop: 3278267

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3458 translation of PA3458Homolog Bit Score 306.0

          
Other Homologs:  t_PA3458 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTGAAAGTAATAAGACCGCTGCCGATACCTATTCGCTCGCTATTTTCCGCGCCATCCGCCGCCTCCAG 
CAGGCCGCTGAAATCCACTCCAAGCGTCTCAGCCGATACGGCGGCCTGACCCCGCTGCAATTGCTGATCCTG 
CATGTCCTGGCGGTGGAGGGAGAACTGACCGCGACGCAACTGGCCAAGCTGGTCAGCCTGTCCCAGGCATCG 
CTCTCCGGCGTGCTCGACCGCCTCGAAGGACGCGGCCTGCTCTATCGTCGGCGCGACGAACAGGACCGGCGC 
AAGTCCTGGCTGCACCTCGACCCGGCCGGCCACGAAGCCCTGGCGGAAGCGCCGCCGCTATTGCCGGAGTAC 
GTGATCGAGCGCTTCGCCGCGTTGCCCGAGTGGGAGCGCCACGGCCTGCTGGCCGCGCTGCTGCGCGCGGCC 
GACCTGTTCGGCCTGCCGGAAGAGGACGTCGAAGAAGAGTGA