ViewGene
Locus Name:
GeneID:
Location:

GeneID:4472
TrivialName: PA14_28070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28070
PAO1 Ortholog Locus:PA2786
Sequence Length:468
Protein Length:155
Start: 2431645
Stop: 2431178
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06174.1|AE004706_4 (AE004706) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 152/155 (98%), Positives = 153/155 (98%)
Sequence:
ATGGCGAAATCCTCCGAACGATTCGAATCCCTGCGCCGGGATATCGACGCACTGGCCCGCCGGCTCGACGTG
CCGTCGGTGCTGATCATGCGTTCCCTGCCCCGGCACATGCGCGTCGAGGCCTCCGCCGGACGCCTGGAGGAC
ACCTACCCGATCGGCGCCGAAGGCCGCAAGAGCGTCCATGAAGACGGCGCCCAACCCCTCTACTGCGAACGC
GTGGTCGACCACGACGCCCCGTTGCACGTGCGCGACTCGCGCCAGGAGACGGAATGGGCCGGCAACGAGGAT
GAAGTCGAGTTCGGCCTGAGCAACTACCTTGGCTATCCGGTTCATACGCCCGACGGCACCCCGTACGGCACC
GTCTGCGTACTCGACAGCCGACCGCGCGACTATTCGGCCGAGGAACGGGCCCTGCTGGAAGAATTGCGGCGC
AAGGTCGAGGCGCTGCTGGCGGAAACCGTCTCATGA
Translation:
MAKSSERFESLRRDIDALARRLDVPSVLIMRSLPRHMRVEASAGRLEDTYPIGAEGRKSVHEDGAQPLYCER
VVDHDAPLHVRDSRQETEWAGNEDEVEFGLSNYLGYPVHTPDGTPYGTVCVLDSRPRDYSAEERALLEELRR
KVEALLAETVS*
AnnotationID:4478GeneID:4472
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 03:03:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2786
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8945




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26087




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36242




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4472_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4472
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6817
                           PA2786_tr
                           translation of PA2786
                           155
                           98.06
                           98.70
                           0
                           785.0
     

     
     
182379
                           gb|AAG06174.1|AE004706_4
                           (AE004706) hypothetical protein PA2786 [Pseudomonas aeruginosa PAO1]
                           155
                           98.06
                           98.70
                           0
                           785.0
     

     






      

          
GC ORFID: 47474How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2786Glimmer Score: 

          
Start: 2522281Stop: 2522748

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2786 translation of PA2786Homolog Bit Score 306.0

          
Other Homologs:  t_PA2786 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGAAATCCTCCGAACGATTCGAATCCCTGCGCCGGGATATCGACGCACTGGCCCGCCGGCTCGACGTG 
CCGTCGGTGCTGATCATGCGTTCCCTGCCCCGGCACATGCGCGTCGAGGCCTCCGCCGGACGCCTGGAGGAC 
ACCTACCCGATCGGCGCCGAAGGCCGCAAGAGCGTCCATGAAGACGGCGCCCAACCCCTCTACTGCGAACGC 
GTGGTCGACCACGACGCCCCGTTGCACGTGCGCGACTCGCGCCAGGAGACGGAATGGGCCGGCAACGAGGAT 
GAAGTCGAGTTCGGCCTGAGCAACTACCTTGGCTATCCGGTTCATACGCCCGACGGCACCCCGTACGGCACC 
GTCTGCGTACTCGACAGCCGACCGCGCGACTATTCGGCCGAGGAACGGGCCCTGCTGGAAGAATTGCGGCGC 
AAGGTCGAGGCGCTGCTGGCGGAAACCGTCTCATGA