ViewGene
Locus Name:
GeneID:
Location:

GeneID:4471
TrivialName: PA14_39630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39630
PAO1 Ortholog Locus:PA1924
Sequence Length:477
Protein Length:158
Start: 3529038
Stop: 3528562
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05312.1|AE004618_6 (AE004618) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 158/158 (100%), Positives = 158/158 (100%)
Sequence:
ATGAATGGTCTGGAAACCAGCCTCTACGAACTCACCCGCCTGTTCCTGCTGCCGGTGCTGCTGTTGATCCTC
GCCGCGCTGGCCTACGCCTTCGTCGCCCTCGGCGGCTTCGCCATGGAAGCCTGGCAGCGCCGTCGCGGGCGC
TACCGCTCGCGCCTGGCGGCCTGGCAGGCGCTGCATGGCGGCAACAGCGACGACCTCGAACTGTGGATCATG
CAGCGCCTGGAATGGCTGCGGATCACCTCGCGCAGCGCGCCGATGCTCGGCCTGGTGGCGACCATGATCCCC
ATGGGGCCGGCGCTGCTGGCGCTGACCCGCAACGACGCCCAGGGGATCGGCGAGAACCTGGTGGTGGCGTTT
TCCGCGGTGATCCTGGCCCTGGTCGCCGCCAGCATCACCTTCTTCATCCTCACCGTGCGTCGCCGCTGGCTG
CTCCAGGAACTGCGCGCCGTCGAACGCGCGCGGGAGGCCGGCTGA
Translation:
MNGLETSLYELTRLFLLPVLLLILAALAYAFVALGGFAMEAWQRRRGRYRSRLAAWQALHGGNSDDLELWIM
QRLEWLRITSRSAPMLGLVATMIPMGPALLALTRNDAQGIGENLVVAFSAVILALVAASITFFILTVRRRWL
LQELRAVERAREAG*
AnnotationID:4477GeneID:4471
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:30
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1924
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8943




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26085




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32757




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4471_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4471
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6816
                           PA1924_tr
                           translation of PA1924
                           158
                           99.99
                           99.99
                           0
                           784.0
     

     
     
182375
                           gb|AAG05312.1|AE004618_6
                           (AE004618) hypothetical protein PA1924 [Pseudomonas aeruginosa PAO1]
                           158
                           99.99
                           99.99
                           0
                           784.0
     

     
     
182376
                           emb|CAE27841.1|
                           (BX572600) conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
                           158
                           75.31
                           84.81
                           2
                           574.0
     

     
     
182377
                           emb|CAD84667.1|
                           (BX321858) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           169
                           46.74
                           64.49
                           11
                           366.0
     

     
     
182378
                           emb|CAD84542.1|
                           (BX321858) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           180
                           42.22
                           57.77
                           22
                           336.0
     

     






      

          
GC ORFID: 47473How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1924Glimmer Score: 

          
Start: 1424873Stop: 1425349

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1924 translation of PA1924Homolog Bit Score 306.0

          
Other Homologs:  t_PA1924 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGGTCTGGAAACCAGCCTCTACGAACTCACCCGCCTGTTCCTGCTGCCGGTGCTGCTGTTGATCCTC 
GCCGCGCTGGCCTACGCCTTCGTCGCCCTCGGCGGCTTCGCCATGGAAGCCTGGCAGCGCCGTCGCGGGCGC 
TACCGCTCGCGCCTGGCGGCCTGGCAGGCGCTGCATGGCGGCAACAGCGACGACCTCGAACTGTGGATCATG 
CAGCGCCTGGAATGGCTGCGGATCACCTCGCGCAGCGCGCCGATGCTCGGCCTGGTGGCGACCATGATCCCC 
ATGGGGCCGGCGCTGCTGGCGCTGACCCGCAACGACGCCCAGGGGATCGGCGAGAACCTGGTGGTGGCGTTT 
TCCGCGGTGATCCTGGCCCTGGTCGCCGCCAGCATCACCTTCTTCATCCTCACCGTGCGTCGCCGCTGGCTG 
CTCCAGGAACTGCGCGCCGTCGAACGCGCGCGGGAGGCCGGCTGA