ViewGene
Locus Name:
GeneID:
Location:

GeneID:4470
TrivialName: PA14_43880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43880
PAO1 Ortholog Locus:PA1594
Sequence Length:447
Protein Length:148
Start: 3907802
Stop: 3907356
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04983.1|AE004587_7 (AE004587) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 148/148 (100%), Positives = 148/148 (100%)
Sequence:
ATGAGCCCGACCAGCCTCGAGCAACTGGTCCGCGACGCGCGCCGGAACAACGACTACAGCCCGCTGGTGGAG
CTGATCCCGTACGCCAAGCTGCTCGGCATCGAATGCCTGCGCCTGGGCGACGACATGGTCTTCCGCCTGCCG
GCGAACAAGGACAACATCGGCAACCCGACCCTGCCGGCCATCCATGGCGGTGTGATCGCCGGCTTCATGGAG
CATGCGGCGATGTTGCACCTGCTGACTTTCATGAGCATTCCGCACCTGCCGAAGATCATCGATTTCTCCATC
GATTACCTGCGTGCCGGGCACTTCCGCGATACCTACGCGCAATGCCAGGTCTGGCGCCAGGGGCGACGGGTG
GCGAACGTCGCGATCAACGCCTGGCAGACCACCCAGGGCGAGCCCATCGCCACCGCGCGGGCGCATTTCAAG
GTGGACGAGCCGTGA
Translation:
MSPTSLEQLVRDARRNNDYSPLVELIPYAKLLGIECLRLGDDMVFRLPANKDNIGNPTLPAIHGGVIAGFME
HAAMLHLLTFMSIPHLPKIIDFSIDYLRAGHFRDTYAQCQVWRQGRRVANVAINAWQTTQGEPIATARAHFK
VDEP*
AnnotationID:4476GeneID:4470
AnnotatorUID: diggins
Modification Date/Time: 2005-05-31 06:06:39
Gene Name:
Confidence Code:3
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA1594
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2050,pfam03061
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2050, PaaI, Uncharacterized protein, possibly involved in aromatic 
compounds catabolism 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 141 residues,  98.6% aligned
Score = 93.2 bits (231), Expect = 1e-20
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 3/141 (2%)

pfam03061, 4HBT, Thioesterase superfamily. 
CD-Length = 78 residues,  97.4% aligned
Score = 46.4 bits (110), Expect = 2e-06
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 2/77 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8941




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26083




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38051




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4470_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4470
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6815
                           PA1594_tr
                           translation of PA1594
                           148
                           99.99
                           99.99
                           0
                           783.0
     

     
     
182370
                           gb|AAG04983.1|AE004587_7
                           (AE004587) hypothetical protein PA1594 [Pseudomonas aeruginosa PAO1]
                           148
                           99.99
                           99.99
                           0
                           783.0
     

     
     
182371
                           gb|AAN69761.1|AE016612_7
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           161
                           62.73
                           72.04
                           14
                           521.0
     

     
     
182372
                           gb|AAN55749.1|AE015711_6
                           (AE015711) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           161
                           50.93
                           70.18
                           15
                           445.0
     

     
     
182373
                           gb|AAQ59972.1|
                           (AE016918) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           152
                           42.76
                           61.18
                           10
                           330.0
     

     






      

          
GC ORFID: 47472How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1594Glimmer Score: 

          
Start: 1046107Stop: 1046553

          
Length: 447


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1594 translation of PA1594Homolog Bit Score 306.0

          
Other Homologs:  t_PA1594 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCCGACCAGCCTCGAGCAACTGGTCCGCGACGCGCGCCGGAACAACGACTACAGCCCGCTGGTGGAG 
CTGATCCCGTACGCCAAGCTGCTCGGCATCGAATGCCTGCGCCTGGGCGACGACATGGTCTTCCGCCTGCCG 
GCGAACAAGGACAACATCGGCAACCCGACCCTGCCGGCCATCCATGGCGGTGTGATCGCCGGCTTCATGGAG 
CATGCGGCGATGTTGCACCTGCTGACTTTCATGAGCATTCCGCACCTGCCGAAGATCATCGATTTCTCCATC 
GATTACCTGCGTGCCGGGCACTTCCGCGATACCTACGCGCAATGCCAGGTCTGGCGCCAGGGGCGACGGGTG 
GCGAACGTCGCGATCAACGCCTGGCAGACCACCCAGGGCGAGCCCATCGCCACCGCGCGGGCGCATTTCAAG 
GTGGACGAGCCGTGA