ViewGene
Locus Name:
GeneID:
Location:

GeneID:4469
TrivialName: PA14_54550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54550
PAO1 Ortholog Locus:PA0753
Sequence Length:471
Protein Length:156
Start: 4836101
Stop: 4836571
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04142.1|AE004510_6 (AE004510) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 150/156 (96%), Positives = 152/156 (97%)
Sequence:
ATGACCCGTTCCAACCTGTACCAGCGCCTGTTCGCCGGGCTCTGGCTGCTCGCCTGCGTCGGCCTGGCGGTC
GCCGGCTGGCGTTACCAGGCGCCGTTTTCCTACGAACCGGTCGGCCCGCGCGCCTACCCGCTGCTCTGCCTG
GCGCTGATGGGCGCCGGCCTGGCCTGGTTGATCGTGCGGCCGACGCCGATTCGCCACGCCGAGGACGAACAG
CCGCTGAGCGGCGCCGTGCTGCTCAAGGTGCTCGCCTGCATCGCCCTGCTGCTGGTGTTCGCCGGTCTGTTC
GAAGCGCTCGGTTTCATCCTCAGCGCCGCCCTGGTCGGCTCCTGCATGGCCATTCTCTACGGCGCCCGGCCA
CTGCCCGCGGTGATCACCGCGAGCCTGCTCGGGATCGGCCTCTACTGGCTGTTCGACCGCGCCCTGGACGTC
CCGCTGCCGCTGGGCGTTCTCGACTTCCTGCCGCTGTGA
Translation:
MTRSNLYQRLFAGLWLLACVGLAVAGWRYQAPFSYEPVGPRAYPLLCLALMGAGLAWLIVRPTPIRHAEDEQ
PLSGAVLLKVLACIALLLVFAGLFEALGFILSAALVGSCMAILYGARPLPAVITASLLGIGLYWLFDRALDV
PLPLGVLDFLPL*
AnnotationID:4475GeneID:4469
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 12:12:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0753
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8939




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26081




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4469
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6814
                           PA0753_tr
                           translation of PA0753
                           156
                           96.15
                           97.43
                           0
                           785.0
     

     
     
182363
                           gb|AAG04142.1|AE004510_6
                           (AE004510) hypothetical protein PA0753 [Pseudomonas aeruginosa PAO1]
                           156
                           96.15
                           97.43
                           0
                           785.0
     

     
     
182364
                           gb|AAO57689.1|
                           (AE016871) membrane protein TctB, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           156
                           58.33
                           73.07
                           4
                           465.0
     

     
     
182365
                           gb|AAN67039.1|AE016332_9
                           (AE016779) tricarboxylate transport protein TctB, putative [Pseudomonas putida KT2440]
                           161
                           56.52
                           65.83
                           5
                           434.0
     

     
     
182366
                           gb|AAL21672.1|
                           (AE008827) tricarboxylic transport protein [Salmonella typhimurium LT2]
                           163
                           40.49
                           57.05
                           26
                           264.0
     

     






      

          
GC ORFID: 47471How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0753Glimmer Score: 

          
Start: 117806Stop: 117336

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0753 translation of PA0753Homolog Bit Score 306.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2600 (ORF: BLASTX 190.0), t_PA0753 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCGTTCCAACCTGTACCAGCGCCTGTTCGCCGGGCTCTGGCTGCTCGCCTGCGTCGGCCTGGCGGTC 
GCCGGCTGGCGTTACCAGGCGCCGTTTTCCTACGAACCGGTCGGCCCGCGCGCCTACCCGCTGCTCTGCCTG 
GCGCTGATGGGCGCCGGCCTGGCCTGGTTGATCGTGCGGCCGACGCCGATTCGCCACGCCGAGGACGAACAG 
CCGCTGAGCGGCGCCGTGCTGCTCAAGGTGCTCGCCTGCATCGCCCTGCTGCTGGTGTTCGCCGGTCTGTTC 
GAAGCGCTCGGTTTCATCCTCAGCGCCGCCCTGGTCGGCTCCTGCATGGCCATTCTCTACGGCGCCCGGCCA 
CTGCCCGCGGTGATCACCGCGAGCCTGCTCGGGATCGGCCTCTACTGGCTGTTCGACCGCGCCCTGGACGTC 
CCGCTGCCGCTGGGCGTTCTCGACTTCCTGCCGCTGTGA