ViewGene
Locus Name:
GeneID:
Location:

GeneID:4468
TrivialName: PA14_00960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00960
PAO1 Ortholog Locus:PA0080
Sequence Length:465
Protein Length:154
Start: 95866
Stop: 95402
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03470.1|AE004447_3 (AE004447) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/154 (100%), Positives = 154/154 (100%)
Sequence:
ATGCAGAAACTGATCGTCGCGCTGTTCGGGCTGCTGCTCGCCGCCTGTTCGTCCAGCCCGCCGGAAACCCCG
CCGACCCGGGTGGTGATCTGGCTCCACGCCGCACCGAACCTCAACCCGTCCGCCGCCGGCCAGGCGGCGCCG
CTGCGCCTGCGGCTGTACGAGCTGAAGAAAGACACCGCGTTCGGCCGCGCCGACTACTTCGCCCTCACCGAC
AACGCCCAGTCGACCCTCGGCGGCGACCTGGTGGAGCAGGACGAGTTCCTCCTGCGTCCGGGCGAGGAACGG
CGCATCGAACGCACGCTCGACGAGCAGACCCGCCAGCTCGGCTTCGTCGCCGCCTACCGCGACCTCGACCGC
GCCACCTGGCGCCAGGTCCTCGACGTGCCGGGGCAACGCACCAGCCATCTCGACATCACGCTCGGCGCGCAG
GCCATCGGCATCGTCGCGCGTCCCGCGCCCTGA
Translation:
MQKLIVALFGLLLAACSSSPPETPPTRVVIWLHAAPNLNPSAAGQAAPLRLRLYELKKDTAFGRADYFALTD
NAQSTLGGDLVEQDEFLLRPGEERRIERTLDEQTRQLGFVAAYRDLDRATWRQVLDVPGQRTSHLDITLGAQ
AIGIVARPAP*
AnnotationID:4474GeneID:4468
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:03
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA0080
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL19237.1| (AE008707) putative outer membrane lipoprotein [Salmonella
           typhimurium LT2]
          Length = 178

 Score =  107 bits (268), Expect = 2e-23
 Identities = 53/122 (43%), Positives = 79/122 (64%), Gaps = 2/122 (1%)

>gb|AAO70161.1| (AE016842) probable lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 178

 Score =  107 bits (268), Expect = 2e-23
 Identities = 53/122 (43%), Positives = 79/122 (64%), Gaps = 2/122 (1%)

>emb|CAC48211.1| (AJ320483) SciN protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 163

 Score =  107 bits (268), Expect = 2e-23
 Identities = 53/122 (43%), Positives = 79/122 (64%), Gaps = 2/122 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8937




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26079




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33432




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4468_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4468
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6813
                           PA0080_tr
                           translation of PA0080
                           154
                           99.99
                           99.99
                           0
                           786.0
     

     
     
182358
                           gb|AAG03470.1|AE004447_3
                           (AE004447) hypothetical protein PA0080 [Pseudomonas aeruginosa PAO1]
                           154
                           99.99
                           99.99
                           0
                           786.0
     

     
     
182361
                           emb|CAC48211.1|
                           (AJ320483) SciN protein [Salmonella enterica subsp. enterica serovar Typhimurium]
                           169
                           36.68
                           53.84
                           21
                           268.0
     

     
     
182359
                           gb|AAL19237.1|
                           (AE008707) putative outer membrane lipoprotein [Salmonella typhimurium LT2]
                           179
                           33.51
                           50.83
                           26
                           264.0
     

     
     
182360
                           gb|AAO70161.1|
                           (AE016842) probable lipoprotein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           179
                           33.51
                           50.83
                           26
                           264.0
     

     






      

          
GC ORFID: 47470How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0080Glimmer Score: 

          
Start: 5897205Stop: 5896741

          
Length: 465


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0080 translation of PA0080Homolog Bit Score 307.0

          
Other Homologs:  t_PA0080 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGAAACTGATCGTCGCGCTGTTCGGGCTGCTGCTCGCCGCCTGTTCGTCCAGCCCGCCGGAAACCCCG 
CCGACCCGGGTGGTGATCTGGCTCCACGCCGCACCGAACCTCAACCCGTCCGCCGCCGGCCAGGCGGCGCCG 
CTGCGCCTGCGGCTGTACGAGCTGAAGAAAGACACCGCGTTCGGCCGCGCCGACTACTTCGCCCTCACCGAC 
AACGCCCAGTCGACCCTCGGCGGCGACCTGGTGGAGCAGGACGAGTTCCTCCTGCGTCCGGGCGAGGAACGG 
CGCATCGAACGCACGCTCGACGAGCAGACCCGCCAGCTCGGCTTCGTCGCCGCCTACCGCGACCTCGACCGC 
GCCACCTGGCGCCAGGTCCTCGACGTGCCGGGGCAACGCACCAGCCATCTCGACATCACGCTCGGCGCGCAG 
GCCATCGGCATCGTCGCGCGTCCCGCGCCCTGA