ViewGene

Locus Name:
GeneID:
Location:

GeneID:4467
TrivialName: PA14_55800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55800
PAO1 Ortholog Locus:PA4295
Sequence Length:483
Protein Length:160
Start: 4983374
Stop: 4983856
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07683.1|AE004845_9 (AE004845) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 158/160 (98%), Positives = 159/160 (99%)
Sequence:
ATGGAGCAATTAGCACTGGCCTTGTGGGCAAGCGTTTGCGGATATCAGGACATCAAACGTTTGCGCGTCTCC
AACTGGCTTATCCTGGGCGGATTTCTTATTTCCTTTGTTTATTTATATGTGAAAGAGTCAAGCCTGACCGGT
GCTACGGTTAATATGGCAATGACCGCACTTTTTATAGGCGTCTGCCTCAGCCTTCCCGGCTACCTTCTCGGC
AGGCTCGGCGCTGCCGACGTCAAGTACCTGGCCGCACTGGGGCTGGCCAGCGACCCACTTACGGTGCTCTAT
AGCCTGGCCTTCGGCTGCCTGCTGTGCATCGCGCTATTCATCCTCGTAAAGTTATTCAAACGTTCGGTAGAA
AAGTCCGCAATGAATGAAGAAGTTCGCCTTCGAAGGGCACCGTCAAAAAACAAGTCATTCCCTTTTATATTC
GCCATGAGCGCCGGCCTTTTGGCACATCTGATTATCAGTAAAATTATCTGA
Translation:
MEQLALALWASVCGYQDIKRLRVSNWLILGGFLISFVYLYVKESSLTGATVNMAMTALFIGVCLSLPGYLLG
RLGAADVKYLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSAMNEEVRLRRAPSKNKSFPFIF
AMSAGLLAHLIISKII*
AnnotationID:4473GeneID:4467
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 12:12:19
Gene Name:
Confidence Code:3
GeneProduct:putative pilus assembly protein
Cell Localization:()
Synonyms:PA4295
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:Prepilin peptidase
Functional Category Confidence Code:5
COGs:COG4960
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:3.4.23.43
Status:ACTIVE
Pathway:
Type II secretion system
Homology:
Structural Features:
COG4960, CpaA, Flp pilus assembly protein, protease CpaA 
[Posttranslational modification, protein turnover, chaperones / 
Intracellular trafficking and secretion]
CD-Length = 168 residues,  94.0% aligned
Score =  112 bits (282), Expect = 2e-26
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Genomic Context:
Comment:
ReferenceID:8935
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26077
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36657
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4467_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4467

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6812 PA4295_tr translation of PA4295 160 98.75 99.37 0 787.0
182357 gb|AAG07683.1|AE004845_9 (AE004845) hypothetical protein PA4295 [Pseudomonas aeruginosa PAO1] 160 98.75 99.37 0 787.0
GC ORFID: 47469How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4295Glimmer Score:
Start: 4247050Stop: 4247532
Length: 483
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4295 translation of PA4295Homolog Bit Score 307.0
Other Homologs: t_PA4295 (ORF: GLIMMER)
GC ORF Sequence
ATGGAGCAATTAGCACTGGCCTTGTGGGCAAGCGTTTGCGGATATCAGGACATCAAACGTTTGCGCGTCTCC
AACTGGCTTATCCTGGGCGGATTTCTTATTTCCTTTGTTTATTTATATGTGAAAGAGTCAAGCCTGACCGGT
GCTACGGTTAATATGGCAATGACCGCACTTTTTATAGGCGTCTGCCTCAGCCTTCCCGGCTACCTTCTCGGC
AGGCTCGGCGCTGCCGACGTCAAGTACCTGGCCGCACTGGGGCTGGCCAGCGACCCACTTACGGTGCTCTAT
AGCCTGGCCTTCGGCTGCCTGCTGTGCATCGCGCTATTCATCCTCGTAAAGTTATTCAAACGTTCGGTAGAA
AAGTCCGCAATGAATGAAGAAGTTCGCCTTCGAAGGGCACCGTCAAAAAACAAGTCATTCCCTTTTATATTC
GCCATGAGCGCCGGCCTTTTGGCACATCTGATTATCAGTAAAATTATCTGA