ViewGene

Locus Name:
GeneID:
Location:

GeneID:4466
TrivialName: PA14_11380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11380
PAO1 Ortholog Locus:PA4057
Sequence Length:465
Protein Length:154
Start: 987974
Stop: 988438
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07444.1|AE004822_4 (AE004822) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/154 (100%), Positives = 154/154 (100%)
Sequence:
ATGCATTGTCCCTTCTGCGGTGCCCATGACACCAAAGTGATTGACTCGCGACTGGTCGCCGAGGGCGATCAG
GTGCGCCGGCGCCGCGAGTGCCTGGCCTGCGGCGAACGCTTCACCACCTTCGAGACCGCCGAGCTGGTCATG
CCGCGCCTGATCAAGCAGGACGGCAGCCGCCAGCCGTTCGACGAGGACAAGCTGCGCGCCGGCATGCAGCGC
GCCCTGGAGAAGCGTCCGGTCAGCGTCGAGCGCCTGGAAGCGGCCATCGGCCACATCAAGCACCAGTTGCGC
GCCACCGGCGAGCGCGAGATCAAGTCGCGGGTGCTGGGCGAACTGGTGATGGCCGAGCTGCAGAAGCTCGAC
GAAGTCGCCTACATCCGTTTCGCCTCGGTCTACCGGCGCTTCCAGGACCTCAACGAATTCCGCGAGGAGATC
GAACGCCTCGCCCGCGAGCCGGCCAAGGAATGA
Translation:
MHCPFCGAHDTKVIDSRLVAEGDQVRRRRECLACGERFTTFETAELVMPRLIKQDGSRQPFDEDKLRAGMQR
ALEKRPVSVERLEAAIGHIKHQLRATGEREIKSRVLGELVMAELQKLDEVAYIRFASVYRRFQDLNEFREEI
ERLAREPAKE*
AnnotationID:4472GeneID:4466
AnnotatorUID: diggins
Modification Date/Time: 2005-06-08 07:07:28
Gene Name:
Confidence Code:4
GeneProduct:putative ATP-cone domain protein
Cell Localization:()
Synonyms:ybaD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03477
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam03477, ATP-cone, ATP cone domain.
CD-Length = 90 residues, 100.0% aligned
Score = 72.3 bits (177), Expect = 2e-14
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Genomic Context:
Comment:
ReferenceID:8933
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26075
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36812
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4466_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4466

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6811 PA4057_tr translation of PA4057 154 99.99 99.99 0 786.0
182250 gb|AAG07444.1|AE004822_4 (AE004822) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 154 99.99 99.99 0 786.0
182251 gb|AAO54231.1| (AE016858) conserved hypothetical protein TIGR00244 [Pseudomonas syringae pv. tomato str. DC3000] 154 91.55 97.40 0 734.0
182252 gb|AAN66140.1|AE016242_8 (AE016775) ATP cone domain protein [Pseudomonas putida KT2440] 159 86.16 94.96 5 716.0
182255 emb|CAE16272.1| (BX571872) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 154 69.48 80.51 5 551.0
GC ORFID: 47468How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4057Glimmer Score:
Start: 3965963Stop: 3965499
Length: 465
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4057 translation of PA4057Homolog Bit Score 307.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5261 (ORF: BLASTX 288.0), t_PA4057 (ORF: GLIMMER)
GC ORF Sequence
ATGCATTGTCCCTTCTGCGGTGCCCATGACACCAAAGTGATTGACTCGCGACTGGTCGCCGAGGGCGATCAG
GTGCGCCGGCGCCGCGAGTGCCTGGCCTGCGGCGAACGCTTCACCACCTTCGAGACCGCCGAGCTGGTCATG
CCGCGCCTGATCAAGCAGGACGGCAGCCGCCAGCCGTTCGACGAGGACAAGCTGCGCGCCGGCATGCAGCGC
GCCCTGGAGAAGCGTCCGGTCAGCGTCGAGCGCCTGGAAGCGGCCATCGGCCACATCAAGCACCAGTTGCGC
GCCACCGGCGAGCGCGAGATCAAGTCGCGGGTGCTGGGCGAACTGGTGATGGCCGAGCTGCAGAAGCTCGAC
GAAGTCGCCTACATCCGTTTCGCCTCGGTCTACCGGCGCTTCCAGGACCTCAACGAATTCCGCGAGGAGATC
GAACGCCTCGCCCGCGAGCCGGCCAAGGAATGA