ViewGene
Locus Name:
GeneID:
Location:

GeneID:4465
TrivialName: PA14_46740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46740
PAO1 Ortholog Locus:PA1357
Sequence Length:477
Protein Length:158
Start: 4164555
Stop: 4164079
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04746.1|AE004565_5 (AE004565) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 158/158 (100%), Positives = 158/158 (100%)
Sequence:
ATGAGCCTCGAATCCGTCCGGCGGTTCTTCGCCGAGAAAGCCCCGGACCTGCGCATCATCGAGCTGGAAACC
AGCACCGCCACCGTCGCCCTGGCCGCCGAGGCCCATGGCGTGGAGCCGGGGCGGATCGCCAAGACCCTGTCG
CTGCGGGTCGGCGAGCGCACCGTACTGGTAGTGGCGCGCGGCGACGCGCGGCTGGACAACCGCAAGATCAAG
GCCGCCTTCGGCGGCAAGGCGAAGATGCTCGGCGCCGAGGACGTGGTCGAGCTGACCGGGCACCCGGTCGGC
GGAGTCTGCCCGTTCGGCCTGGCGACGCCGCTGGCGGTGTACTGCGACGTCTCGCTGCAAGCCTTCGACGAA
GTGCTGCCGGCCGCCGGGGCGGTGCACAGCGCGGTCCGCATCGCCCCGCAACGGATGGCCGAGCTGGTGGAT
GCGCAGTGGGTCGATGTGTGCCAGGAAGTCCTCCAGGAAGCCTGA
Translation:
MSLESVRRFFAEKAPDLRIIELETSTATVALAAEAHGVEPGRIAKTLSLRVGERTVLVVARGDARLDNRKIK
AAFGGKAKMLGAEDVVELTGHPVGGVCPFGLATPLAVYCDVSLQAFDEVLPAAGAVHSAVRIAPQRMAELVD
AQWVDVCQEVLQEA*
AnnotationID:4471GeneID:4465
AnnotatorUID: diggins
Modification Date/Time: 2004-12-16 13:01:45
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC52826.1| (AP005962) blr7561 [Bradyrhizobium japonicum USDA 110]
          Length = 155

 Score =  231 bits (588), Expect = 1e-60
 Identities = 110/152 (72%), Positives = 130/152 (85%)

>gb|AAL23367.1| (AE008914) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 152

 Score =  221 bits (562), Expect = 2e-57
 Identities = 106/152 (69%), Positives = 127/152 (83%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8931




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26073




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36496




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4465_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4465
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6810
                           PA1357_tr
                           translation of PA1357
                           158
                           99.99
                           99.99
                           0
                           787.0
     

     
     
182232
                           gb|AAG04746.1|AE004565_5
                           (AE004565) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           158
                           99.99
                           99.99
                           0
                           787.0
     

     
     
182233
                           dbj|BAC52826.1|
                           (AP005962) blr7561 [Bradyrhizobium japonicum USDA 110]
                           158
                           70.25
                           82.91
                           3
                           581.0
     

     
     
182234
                           gb|AAL23367.1|
                           (AE008914) putative cytoplasmic protein [Salmonella typhimurium LT2]
                           158
                           67.08
                           80.37
                           6
                           562.0
     

     
     
182235
                           gb|AAO72027.1|
                           (AE016849) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           158
                           67.08
                           79.74
                           6
                           559.0
     

     






      

          
GC ORFID: 47467How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1357Glimmer Score: 

          
Start: 789354Stop: 789830

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1357 translation of PA1357Homolog Bit Score 307.0

          
Other Homologs:  t_PA1357 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTCGAATCCGTCCGGCGGTTCTTCGCCGAGAAAGCCCCGGACCTGCGCATCATCGAGCTGGAAACC 
AGCACCGCCACCGTCGCCCTGGCCGCCGAGGCCCATGGCGTGGAGCCGGGGCGGATCGCCAAGACCCTGTCG 
CTGCGGGTCGGCGAGCGCACCGTACTGGTAGTGGCGCGCGGCGACGCGCGGCTGGACAACCGCAAGATCAAG 
GCCGCCTTCGGCGGCAAGGCGAAGATGCTCGGCGCCGAGGACGTGGTCGAGCTGACCGGGCACCCGGTCGGC 
GGAGTCTGCCCGTTCGGCCTGGCGACGCCGCTGGCGGTGTACTGCGACGTCTCGCTGCAAGCCTTCGACGAA 
GTGCTGCCGGCCGCCGGGGCGGTGCACAGCGCGGTCCGCATCGCCCCGCAACGGATGGCCGAGCTGGTGGAT 
GCGCAGTGGGTCGATGTGTGCCAGGAAGTCCTCCAGGAAGCCTGA