ViewGene
Locus Name:
GeneID:
Location:

GeneID:4464
TrivialName: PA14_46900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46900
PAO1 Ortholog Locus:PA1343
Sequence Length:459
Protein Length:152
Start: 4177472
Stop: 4177014
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04732.1|AE004564_1 (AE004564) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 150/152 (98%), Positives = 151/152 (99%)
Sequence:
ATGCGCTATCTCATCCTGAGCCTGCTGGCCGTGCTCGCCGCACCTGCCTGGGCTGCCGACGACGGCGACTTC
TGGTACCTGCAGACCAGCGTCTACACCCGGCATTTCAACCCGGACCCGGAACACAACAACCACCAGGACCTG
CTCGGCCTCGAATACAACCGCGCCGATGGCGTGCTGGCCGGCGGCGCGACCTTCCGCAACTCGTTCAGCCAG
CGCTCCAACTACGCCTACCTGGGCAAGCGTTTCGACAGTGACAGCCACCCGGTCTACCTGAAGCTCACCGGC
GGCCTGTTGCAGGGCTATCGCGGCGAATACCGCGACAAGATCCCGCTGAACCGCTTCGGCGTCGCGCCGGCG
ATCATCCCCTCGGTGGGCGTACGCTTAGGCCCGCTGGGCAGCGAGCTGGTGCTGCTCGGCAATTCGGCGGCG
ATGATCAACCTCGGCCTGCGTCTCTGA
Translation:
MRYLILSLLAVLAAPAWAADDGDFWYLQTSVYTRHFNPDPEHNNHQDLLGLEYNRADGVLAGGATFRNSFSQ
RSNYAYLGKRFDSDSHPVYLKLTGGLLQGYRGEYRDKIPLNRFGVAPAIIPSVGVRLGPLGSELVLLGNSAA
MINLGLRL*
AnnotationID:4470GeneID:4464
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 08:08:54
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1343
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8929




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26071




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4464
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6809
                           PA1343_tr
                           translation of PA1343
                           152
                           98.68
                           99.34
                           0
                           787.0
     

     
     
182231
                           gb|AAG04732.1|AE004564_1
                           (AE004564) hypothetical protein PA1343 [Pseudomonas aeruginosa PAO1]
                           152
                           98.68
                           99.34
                           0
                           787.0
     

     






      

          
GC ORFID: 47466How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1343Glimmer Score: 

          
Start: 776437Stop: 776895

          
Length: 459


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1343 translation of PA1343Homolog Bit Score 307.0

          
Other Homologs:  t_PA1343 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTATCTCATCCTGAGCCTGCTGGCCGTGCTCGCCGCACCTGCCTGGGCTGCCGACGACGGCGACTTC 
TGGTACCTGCAGACCAGCGTCTACACCCGGCATTTCAACCCGGACCCGGAACACAACAACCACCAGGACCTG 
CTCGGCCTCGAATACAACCGCGCCGATGGCGTGCTGGCCGGCGGCGCGACCTTCCGCAACTCGTTCAGCCAG 
CGCTCCAACTACGCCTACCTGGGCAAGCGTTTCGACAGTGACAGCCACCCGGTCTACCTGAAGCTCACCGGC 
GGCCTGTTGCAGGGCTATCGCGGCGAATACCGCGACAAGATCCCGCTGAACCGCTTCGGCGTCGCGCCGGCG 
ATCATCCCCTCGGTGGGCGTACGCTTAGGCCCGCTGGGCAGCGAGCTGGTGCTGCTCGGCAATTCGGCGGCG 
ATGATCAACCTCGGCCTGCGTCTCTGA