ViewGene

Locus Name:
GeneID:
Location:

GeneID:4462
TrivialName: PA14_50850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50850
PAO1 Ortholog Locus:PA1044
Sequence Length:465
Protein Length:154
Start: 4520609
Stop: 4521073
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04433.1|AE004536_12 (AE004536) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/154 (100%), Positives = 154/154 (100%)
Sequence:
ATGACCCCCTACGCCCTCGTCTACGCCCTGCATGTCCTGGCCGCCCTGGTCTGGGTCGGAGGCATGTTCTTC
GCCTGGACGATTCTTCGTCCGGCGGCCGTCGCCGCGCTGGAGGCCCCAGCCCGCCTGGGCCTGTGGCTGGAG
GTGTTCCGCCGTTTCTTCCATTGGGTCTGGGCGGCGGTGATCCTGCTGCCGATCAGCGGCGTCGGCATGCTG
CACCTGAGTTTCAACGGTTTCGCCGGCGCGCCGCGCTACGTACAGGTAATGATGGGGCTCTACGTCGCCATG
CTGGCTCTCTTCCTGCGGGTGCAGGCGCTGCAAGTGCCGGAACTGCGCCGCGCGGTGCAGGCCCAGGACTGG
CCGGCAGGCGGGCAGGCGCTGGGGAAGATCCGCCGCACCGTTGGCTTCAACCTGCTCCTCGGCCTGTTGCTG
ATAGCCCTGGTAGCGGCACGCCCGAGCCTCTGA
Translation:
MTPYALVYALHVLAALVWVGGMFFAWTILRPAAVAALEAPARLGLWLEVFRRFFHWVWAAVILLPISGVGML
HLSFNGFAGAPRYVQVMMGLYVAMLALFLRVQALQVPELRRAVQAQDWPAGGQALGKIRRTVGFNLLLGLLL
IALVAARPSL*
AnnotationID:4468GeneID:4462
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 12:12:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1044
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5615
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG5615, Predicted integral membrane protein [Function unknown]
       CD-Length = 161 residues,  98.8% aligned
       Score =  159 bits (404), Expect = 1e-40
Genomic Context:
Comment:
ReferenceID:8925
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26067
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4462

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6803 PA1044_tr translation of PA1044 154 99.99 99.99 0 786.0
182192 gb|AAG04433.1|AE004536_12 (AE004536) hypothetical protein PA1044 [Pseudomonas aeruginosa PAO1] 154 99.99 99.99 0 786.0
182193 gb|AAO57577.1| (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 154 66.88 81.81 0 567.0
182194 gb|AAN66749.1|AE016303_4 (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440] 154 66.23 79.87 0 543.0
182195 emb|CAE31797.1| (BX640440) putative exported protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 160 41.25 55.00 16 249.0
GC ORFID: 47464How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1044Glimmer Score:
Start: 433299Stop: 432835
Length: 465
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1044 translation of PA1044Homolog Bit Score 307.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6083 (ORF: BLASTX 227.0), t_PA1044 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCCCTACGCCCTCGTCTACGCCCTGCATGTCCTGGCCGCCCTGGTCTGGGTCGGAGGCATGTTCTTC
GCCTGGACGATTCTTCGTCCGGCGGCCGTCGCCGCGCTGGAGGCCCCAGCCCGCCTGGGCCTGTGGCTGGAG
GTGTTCCGCCGTTTCTTCCATTGGGTCTGGGCGGCGGTGATCCTGCTGCCGATCAGCGGCGTCGGCATGCTG
CACCTGAGTTTCAACGGTTTCGCCGGCGCGCCGCGCTACGTACAGGTAATGATGGGGCTCTACGTCGCCATG
CTGGCTCTCTTCCTGCGGGTGCAGGCGCTGCAAGTGCCGGAACTGCGCCGCGCGGTGCAGGCCCAGGACTGG
CCGGCAGGCGGGCAGGCGCTGGGGAAGATCCGCCGCACCGTTGGCTTCAACCTGCTCCTCGGCCTGTTGCTG
ATAGCCCTGGTAGCGGCACGCCCGAGCCTCTGA