ViewGene
Locus Name:
GeneID:
Location:

GeneID:4459
TrivialName: PA14_01400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01400
PAO1 Ortholog Locus:PA0115
Sequence Length:453
Protein Length:150
Start: 134301
Stop: 133849
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03505.1|AE004449_14 (AE004449) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 150/150 (100%), Positives = 150/150 (100%)
Sequence:
ATGTCGCTCGACTGGACCTGCAAGCACCACGCCGACCTCACCCTGAAGGAACTCTACGCACTGCTGCAATTG
CGCACCGAGGTCTTCGTGGTGGAACAGAAATGCCCCTACCAGGAAGTCGACGGCCTCGACCTGGTCGGCGAT
ACCCATCACCTGATGGCCTGGCGCGACGGCCAGTTGCTCGCCTACCTGCGCCTGCTGGACCCGGTTCGCCAC
GAGGGCCAGGTGGTGATCGGCCGAGTGGTCAGTTCCTCGGCCGCGCGCGGCCAGGGGCTTGGTCACCAGTTG
ATGGAACGCGCGCTGCAGGCGGCGGAGCGCCTCTGGCTGGATACCCCGGTGTACCTCTCGGCCCAGGCCCAC
CTGCAGGCCTACTACGGCCGCTATGGCTTCGTCGCGGTCACCGAGGTCTACCTGGAAGACGACATCCCGCAC
ATCGGCATGCGCCGGGCCTGA
Translation:
MSLDWTCKHHADLTLKELYALLQLRTEVFVVEQKCPYQEVDGLDLVGDTHHLMAWRDGQLLAYLRLLDPVRH
EGQVVIGRVVSSSAARGQGLGHQLMERALQAAERLWLDTPVYLSAQAHLQAYYGRYGFVAVTEVYLEDDIPH
IGMRRA*
AnnotationID:4465GeneID:4459
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:25
Gene Name:
Confidence Code:3
GeneProduct:putative acyltransferase
Cell Localization:()
Synonyms:elaA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2153
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58439.1| (AE016874) acetyltransferase, GNAT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 152

 Score =  214 bits (544), Expect = 2e-55
 Identities = 98/149 (65%), Positives = 123/149 (82%)

>gb|AAN70523.1|AE016694_6 (AE016792) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 150

 Score =  189 bits (479), Expect = 6e-48
 Identities = 94/149 (63%), Positives = 111/149 (74%)

>gb|AAN81265.1|AE016763_224 (AE016763) Protein elaA [Escherichia coli CFT073]
          Length = 153

 Score =  176 bits (447), Expect = 3e-44
 Identities = 80/147 (54%), Positives = 107/147 (72%)






 
Structural Features:
COG2153, ElaA, Predicted acyltransferase
CD-Length = 155 residues,  97.4% aligned
Score =  221 bits (564), Expect = 4e-59
Identities = 94/151 (62%), Positives = 113/151 (74%), Gaps = 1/151 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8919




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26061




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33490




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4459_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4459
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6802
                           PA0115_tr
                           translation of PA0115
                           150
                           99.99
                           99.99
                           0
                           788.0
     

     
     
182159
                           gb|AAG03505.1|AE004449_14
                           (AE004449) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           150
                           99.99
                           99.99
                           0
                           788.0
     

     
     
182160
                           gb|AAO58439.1|
                           (AE016874) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           152
                           64.47
                           80.92
                           2
                           542.0
     

     
     
182161
                           gb|AAN70523.1|AE016694_6
                           (AE016792) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           150
                           62.66
                           74.00
                           0
                           479.0
     

     
     
182165
                           emb|CAD07545.1|
                           (AL627274) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           154
                           52.59
                           66.88
                           5
                           431.0
     

     






      

          
GC ORFID: 47461How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0115Glimmer Score: 

          
Start: 5935640Stop: 5935188

          
Length: 453


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0115 translation of PA0115Homolog Bit Score 308.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3691 (ORF: BLASTX 216.0), t_PA0115 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCTCGACTGGACCTGCAAGCACCACGCCGACCTCACCCTGAAGGAACTCTACGCACTGCTGCAATTG 
CGCACCGAGGTCTTCGTGGTGGAACAGAAATGCCCCTACCAGGAAGTCGACGGCCTCGACCTGGTCGGCGAT 
ACCCATCACCTGATGGCCTGGCGCGACGGCCAGTTGCTCGCCTACCTGCGCCTGCTGGACCCGGTTCGCCAC 
GAGGGCCAGGTGGTGATCGGCCGAGTGGTCAGTTCCTCGGCCGCGCGCGGCCAGGGGCTTGGTCACCAGTTG 
ATGGAACGCGCGCTGCAGGCGGCGGAGCGCCTCTGGCTGGATACCCCGGTGTACCTCTCGGCCCAGGCCCAC 
CTGCAGGCCTACTACGGCCGCTATGGCTTCGTCGCGGTCACCGAGGTCTACCTGGAAGACGACATCCCGCAC 
ATCGGCATGCGCCGGGCCTGA