ViewGene
Locus Name:
GeneID:
Location:

GeneID:4457
TrivialName: PA14_25050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25050
PAO1 Ortholog Locus:PA3016
Sequence Length:435
Protein Length:144
Start: 2191053
Stop: 2191487
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06404.1|AE004726_10 (AE004726) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 144/144 (100%), Positives = 144/144 (100%)
Sequence:
ATGACCACTTGGCTGGTGATCCTGCTGCTGGCTGTCATGCTCAGTCCCCTGGCCTGGCTGATGCCGTCCAAC
AGGCAGCGCGGCAAGATGGCCCTGCGCCTCGAGGCGCGCCGTCTCGGCCTGGCCATGCAGCTCGCGCGCCAG
GATTGGCCGCATTGGCTGGAGAGCGCTCCGCCGACGTCCTGCGCGCAGTTCCACTGCCCGCGCCGACGCGGC
CGGGAGGCCTGGTGCTATTGGCAGAATACCCCGGGCCAGTGGCTGAACCAGTGGCGCGAGCCGTGCGCGGAC
GATGAGTTGCTGGACGCCCTGCGCAGCCTCCCGGGGGATGTGTACAAGGTGGAGGCGACCGCCCAGTTCCTT
GCCCTGTATTGGGGCGAGCGCGGCGATAGCGCCGACCTCGGGCGCATCGCCGAGTTTCTCCGCCAGCGCGCC
TGA
Translation:
MTTWLVILLLAVMLSPLAWLMPSNRQRGKMALRLEARRLGLAMQLARQDWPHWLESAPPTSCAQFHCPRRRG
REAWCYWQNTPGQWLNQWREPCADDELLDALRSLPGDVYKVEATAQFLALYWGERGDSADLGRIAEFLRQRA
*
AnnotationID:4463GeneID:4457
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 18:06:31
Gene Name:
Confidence Code:3
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8915




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26057




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4457
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6800
                           PA3016_tr
                           translation of PA3016
                           144
                           99.99
                           99.99
                           0
                           790.0
     

     
     
182113
                           gb|AAG06404.1|AE004726_10
                           (AE004726) hypothetical protein PA3016 [Pseudomonas aeruginosa PAO1]
                           144
                           99.99
                           99.99
                           0
                           790.0
     

     
     
182114
                           gb|AAO56994.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           145
                           57.24
                           70.34
                           1
                           468.0
     

     
     
182115
                           gb|AAN67746.1|AE016406_1
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           154
                           53.89
                           66.23
                           10
                           438.0
     

     






      

          
GC ORFID: 47459How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3016Glimmer Score: 

          
Start: 2762874Stop: 2762440

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3016 translation of PA3016Homolog Bit Score 308.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8041 (ORF: BLASTX 183.0), t_PA3016 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACTTGGCTGGTGATCCTGCTGCTGGCTGTCATGCTCAGTCCCCTGGCCTGGCTGATGCCGTCCAAC 
AGGCAGCGCGGCAAGATGGCCCTGCGCCTCGAGGCGCGCCGTCTCGGCCTGGCCATGCAGCTCGCGCGCCAG 
GATTGGCCGCATTGGCTGGAGAGCGCTCCGCCGACGTCCTGCGCGCAGTTCCACTGCCCGCGCCGACGCGGC 
CGGGAGGCCTGGTGCTATTGGCAGAATACCCCGGGCCAGTGGCTGAACCAGTGGCGCGAGCCGTGCGCGGAC 
GATGAGTTGCTGGACGCCCTGCGCAGCCTCCCGGGGGATGTGTACAAGGTGGAGGCGACCGCCCAGTTCCTT 
GCCCTGTATTGGGGCGAGCGCGGCGATAGCGCCGACCTCGGGCGCATCGCCGAGTTTCTCCGCCAGCGCGCC 
TGA