ViewGene
Locus Name:
GeneID:
Location:

GeneID:4454
TrivialName: PA14_51830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51830
PAO1 Ortholog Locus:PA0962
Sequence Length:471
Protein Length:156
Start: 4603516
Stop: 4603986
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04351.1|AE004530_4 (AE004530) probable dna-binding stress protein [Pseudomonas aeruginosa PAO1]
Identities = 156/156 (100%), Positives = 156/156 (100%)
Sequence:
ATGGAAATCAATATCGGAATCGGCGAACAGGATCGCGCAGCCATTGCCGAGGGCCTGTCGCGGCTACTGGCC
GACACCTACACCCTCTACCTGAAAACCCACAACTTCCACTGGAACGTCACCGGCCCGATGTTCAATACGCTG
CACCTGATGTTCGAAGGTCAGTACACCGAACTGGCCGTTGCCGTGGACGACATCGCCGAGCGCATCCGGGCC
CTGGGCTTCCCGGCGCCCGGCACCTACGCCGCCTACGCCCGCCTGTCGTCCATCAAGGAAGAGGAAGGCGTG
CCGGAAGCCGAGGAGATGATCCGGCAACTGGTCCAGGGCCAGGAAGCCGTGGTGCGCACCGCCCGCAGCATC
TTCCCGCTGCTGGACAAGGTCAGCGACGAACCCACCGCCGACCTGCTCACCCAACGCATGCAGGTACATGAA
AAGACCGCCTGGATGTTGCGCAGCCTTCTCGCCAGCTGA
Translation:
MEINIGIGEQDRAAIAEGLSRLLADTYTLYLKTHNFHWNVTGPMFNTLHLMFEGQYTELAVAVDDIAERIRA
LGFPAPGTYAAYARLSSIKEEEGVPEAEEMIRQLVQGQEAVVRTARSIFPLLDKVSDEPTADLLTQRMQVHE
KTAWMLRSLLAS*
AnnotationID:4460GeneID:4454
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 11:11:45
Gene Name:
Confidence Code:3
GeneProduct:probable dna-binding stress protein
Cell Localization:()
Synonyms:PA0962
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0783, cd01043
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) 
       CD-Length = 156 residues,  99.4% aligned
       Score =  196 bits (500), Expect = 9e-52
cd01043, DPS, DPS domain. Score: 175, 3e-45






   
Genomic Context:






   
Comment:


















    ReferenceID:8909




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26051




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4454
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6797
                           PA0962_tr
                           translation of PA0962
                           156
                           99.99
                           99.99
                           0
                           790.0
     

     
     
182019
                           gb|AAG04351.1|AE004530_4
                           (AE004530) probable dna-binding stress protein [Pseudomonas aeruginosa PAO1]
                           156
                           99.99
                           99.99
                           0
                           790.0
     

     
     
182020
                           gb|AAO57442.1|
                           (AE016870) Dps family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           83.43
                           90.44
                           1
                           680.0
     

     
     
182021
                           gb|AAN66834.1|AE016312_5
                           (AE016778) DNA-binding stress protein, putative [Pseudomonas putida KT2440]
                           157
                           82.80
                           89.17
                           1
                           665.0
     

     
     
182022
                           dbj|BAB75844.1|
                           (AP003595) ORF_ID:all4145~probable DNA-binding stress protein [Nostoc sp. PCC 7120]
                           163
                           77.91
                           86.50
                           7
                           654.0
     

     






      

          
GC ORFID: 47456How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0962Glimmer Score: 

          
Start: 350391Stop: 349921

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0962 translation of PA0962Homolog Bit Score 308.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4680 (ORF: BLASTX 266.0), t_PA0962 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAATCAATATCGGAATCGGCGAACAGGATCGCGCAGCCATTGCCGAGGGCCTGTCGCGGCTACTGGCC 
GACACCTACACCCTCTACCTGAAAACCCACAACTTCCACTGGAACGTCACCGGCCCGATGTTCAATACGCTG 
CACCTGATGTTCGAAGGTCAGTACACCGAACTGGCCGTTGCCGTGGACGACATCGCCGAGCGCATCCGGGCC 
CTGGGCTTCCCGGCGCCCGGCACCTACGCCGCCTACGCCCGCCTGTCGTCCATCAAGGAAGAGGAAGGCGTG 
CCGGAAGCCGAGGAGATGATCCGGCAACTGGTCCAGGGCCAGGAAGCCGTGGTGCGCACCGCCCGCAGCATC 
TTCCCGCTGCTGGACAAGGTCAGCGACGAACCCACCGCCGACCTGCTCACCCAACGCATGCAGGTACATGAA 
AAGACCGCCTGGATGTTGCGCAGCCTTCTCGCCAGCTGA