ViewGene
Locus Name:
GeneID:
Location:

GeneID:4453
TrivialName: PA14_69050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69050
PAO1 Ortholog Locus:PA5229
Sequence Length:459
Protein Length:152
Start: 6157699
Stop: 6158157
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08614.1|AE004935_11 (AE004935) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/152 (99%), Positives = 151/152 (99%)
Sequence:
ATGCCTGCCTACTGGCTGATGAAATCCGAGCCGGACGAACTCTCGATCCGCGACCTGCAGCGCCTCGGAACC
GCCCGCTGGGATGGCGTGCGCAACTACCAGGCGCGCAACTTCATCCGCAGCATGAACCCCGGCGACCTGTTC
TTCTTCTACCACTCCAGTTGCCCGCAGCCCGGCATCGCCGGTATCGCCCGCATCGAGGGCGAAGCCTATCCC
GATCCCACGGCCCTGGATCCCGCCAGCCCTTACCACGACCCCAAGGCCAGCGCCGAGAAGAATCCCTGGAGC
GCCCGCGACGTCAGCTTCGTCGAAGCCTTCGCCGAGGTCGTTCCACTGGCCCGGCTGAAGGCGCAGGACGCC
CTGGCCAACCTCGCCCTGGTGCAGAAGGGCAGCCGTCTCTCGGTGATGCCGGTCAGCGCCGAGGAATGGCAG
GCGATCCTGCCGCTGGCGAAACGCTGA
Translation:
MPAYWLMKSEPDELSIRDLQRLGTARWDGVRNYQARNFIRSMNPGDLFFFYHSSCPQPGIAGIARIEGEAYP
DPTALDPASPYHDPKASAEKNPWSARDVSFVEAFAEVVPLARLKAQDALANLALVQKGSRLSVMPVSAEEWQ
AILPLAKR*
AnnotationID:4459GeneID:4453
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5229
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8907




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26049




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34842




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4453_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4453
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6796
                           PA5229_tr
                           translation of PA5229
                           152
                           99.34
                           99.34
                           0
                           791.0
     

     
     
181990
                           gb|AAG08614.1|AE004935_11
                           (AE004935) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           152
                           99.34
                           99.34
                           0
                           791.0
     

     
     
181991
                           gb|AAO58655.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           152
                           70.39
                           76.97
                           3
                           559.0
     

     
     
181992
                           gb|AAN70770.1|AE016721_3
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           152
                           69.73
                           76.97
                           3
                           552.0
     

     
     
181993
                           gb|AAN55020.1|AE015640_3
                           (AE015640) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           155
                           53.54
                           67.09
                           5
                           424.0
     

     






      

          
GC ORFID: 47455How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5229Glimmer Score: 

          
Start: 5421386Stop: 5421844

          
Length: 459


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5229 translation of PA5229Homolog Bit Score 309.0

          
Other Homologs:  t_PA5229 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGCCTACTGGCTGATGAAATCCGAGCCGGACGAACTCTCGATCCGCGACCTGCAGCGCCTCGGAACC 
GCCCGCTGGGATGGCGTGCGCAACTACCAGGCGCGCAACTTCATCCGCAGCATGAACCCCGGCGACCTGTTC 
TTCTTCTACCACTCCAGTTGCCCGCAGCCCGGCATCGCCGGTATCGCCCGCATCGAGGGCGAAGCCTATCCC 
GATCCCACGGCCCTGGATCCCGCCAGCCCTTACCACGACCCCAAGGCCAGCGCCGAGAAGAATCCCTGGAGC 
GCCCGCGACGTCAGCTTCGTCGAAGCCTTCGCCGAGGTCGTTCCACTGGCCCGGCTGAAGGCGCAGGACGCC 
CTGGCCAACCTCGCCCTGGTGCAGAAGGGCAGCCGTCTCTCGGTGATGCCGGTCAGCGCCGAGGAATGGCAG 
GCGATCCTGCCGCTGGCGAAACGCTGA