ViewGene
Locus Name:
GeneID:
Location:

GeneID:4452
TrivialName: PA14_61880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61880
PAO1 Ortholog Locus:PA4678
Sequence Length:453
Protein Length:150
Start: 5520016
Stop: 5519564
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08065.1|AE004881_8 (AE004881) peptide n-acetyltransferase RimI [Pseudomonas aeruginosa PAO1]
Identities = 150/150 (100%), Positives = 150/150 (100%)
Sequence:
ATGAGCGATGCGATTTCCTTCCGCCCGATGACCGAGGCGGACCTCGATGCCGTGCTGAAAATCGAATATGCC
GCCTTCAGTCACCCCTGGACCCGTGGCATCTTCAGCGAAGGCCTGAAGAACTACCATTGCTGGCTGATGTTC
GAGGGTAGCCAGCAGGTCGGCCATGGCGTCATCCAGATCATCCTCGACGAGGCGCACCTGCTGAATATCACG
GTGAAGCCCGAAAGCCAGGGGCGTGGCCTCGGTCTGCGCCTGCTCGAACACCTGATGCGCGAGGCGGCCGGC
CACCAGGCTCGCGAATGCTTCCTCGAAGTGCGCGCTTCCAACCAGGCCGCCTACCGCCTCTACGAACGCTAC
GGTTTCAACGAGATCGGCCGCCGTCGCGACTACTACCCCGCCGTCGGCGGGCGCGAAGACGCCCTGGTCATG
GCCTGTACCCTGTTCGACTGA
Translation:
MSDAISFRPMTEADLDAVLKIEYAAFSHPWTRGIFSEGLKNYHCWLMFEGSQQVGHGVIQIILDEAHLLNIT
VKPESQGRGLGLRLLEHLMREAAGHQARECFLEVRASNQAAYRLYERYGFNEIGRRRDYYPAVGGREDALVM
ACTLFD*
AnnotationID:4458GeneID:4452
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 20:08:23
Gene Name:rimI
Confidence Code:2
GeneProduct:peptide n-acetyltransferase RimI
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:ribosomal-protein-alanine acetyltransferase
Functional Category Confidence Code:5
COGs:COG0456,pfam00583
Secondary Functional Category(ies):
EC Number:2.3.1.128
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66322.1|AE016260_8 (AE016776) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 151

 Score =  259 bits (662), Expect = 3e-69
 Identities = 124/150 (82%), Positives = 134/150 (89%)

>gb|AAO54526.1| (AE016859) ribosomal-protein-alanine acetyltransferase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 151

 Score =  251 bits (641), Expect = 9e-67
 Identities = 121/151 (80%), Positives = 136/151 (90%), Gaps = 1/151 (0%)

>gb|AAM38406.1| (AE012006) ribosomal-protein-alanine acetyltransferase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 160

 Score =  146 bits (368), Expect = 4e-35
 Identities = 77/145 (53%), Positives = 97/145 (66%), Gaps = 1/145 (0%)








 
Structural Features:
COG0456, RimI, Acetyltransferases.
CD-Length = 177 residues,  94.9% aligned
Score = 87.0 bits (214), Expect = 9e-19
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 22/170 (12%)

pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues,  98.8% aligned
Score = 59.5 bits (144), Expect = 1e-10
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8905




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26047




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37618




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4452_cdd.html


    		




 
URL:

















    ReferenceID:37761




  
Author/Investigator(s):
        Yoshikawa A, Isono S, Sheback A, Isono K.





  
Title:
        Cloning and nucleotide sequencing of the genes rimI and rimJ which encode enzymes acetylating ribosomal proteins S18 and S5 of Escherichia coli K12.




  
PubMed:
        2828880


MedLine:
        




    
Source:
Mol Gen Genet. 1987 Oct;209(3):481-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2828880









           
Homologs By Global Alignment 

           

       



     
Gene ID:4452
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6795
                           PA4678_tr
                           translation of PA4678
                           150
                           99.99
                           99.99
                           0
                           792.0
     

     
     
181963
                           gb|AAG08065.1|AE004881_8
                           (AE004881) peptide n-acetyltransferase RimI [Pseudomonas aeruginosa PAO1]
                           150
                           99.99
                           99.99
                           0
                           792.0
     

     
     
181964
                           gb|AAN66322.1|AE016260_8
                           (AE016776) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           151
                           82.11
                           88.74
                           1
                           662.0
     

     
     
181965
                           gb|AAO54526.1|
                           (AE016859) ribosomal-protein-alanine acetyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           151
                           80.13
                           90.06
                           1
                           643.0
     

     
     
181967
                           gb|AAM39959.1|
                           (AE012162) ribosomal-protein-alanine acetyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           162
                           48.14
                           59.87
                           14
                           356.0
     

     






      

          
GC ORFID: 47454How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4678Glimmer Score: 

          
Start: 4783696Stop: 4783244

          
Length: 453


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4678 translation of PA4678Homolog Bit Score 309.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4237 (ORF: BLASTX 257.0), t_PA4678 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATGCGATTTCCTTCCGCCCGATGACCGAGGCGGACCTCGATGCCGTGCTGAAAATCGAATATGCC 
GCCTTCAGTCACCCCTGGACCCGTGGCATCTTCAGCGAAGGCCTGAAGAACTACCATTGCTGGCTGATGTTC 
GAGGGTAGCCAGCAGGTCGGCCATGGCGTCATCCAGATCATCCTCGACGAGGCGCACCTGCTGAATATCACG 
GTGAAGCCCGAAAGCCAGGGGCGTGGCCTCGGTCTGCGCCTGCTCGAACACCTGATGCGCGAGGCGGCCGGC 
CACCAGGCTCGCGAATGCTTCCTCGAAGTGCGCGCTTCCAACCAGGCCGCCTACCGCCTCTACGAACGCTAC 
GGTTTCAACGAGATCGGCCGCCGTCGCGACTACTACCCCGCCGTCGGCGGGCGCGAAGACGCCCTGGTCATG 
GCCTGTACCCTGTTCGACTGA