ViewGene
Locus Name:
GeneID:
Location:

GeneID:4451
TrivialName: PA14_58010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58010
PAO1 Ortholog Locus:PA4469
Sequence Length:450
Protein Length:149
Start: 5162103
Stop: 5161654
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07857.1|AE004860_13 (AE004860) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 149/149 (100%), Positives = 149/149 (100%)
Sequence:
ATGCGTCATTGGCAACGAACGATCGAACAGGGCAACCGCTGTTTCGTCACCGGCGCATTGATCGATGCGCGT
GAGCACTACCTCCATGCCCTGGCCCTGGCCCAGGTGCTGCTGGAACGCTGGGGCGACGCCGACGAGGCGGTG
ATGGCGTTCGTCATTTCCCATCACAACCTGGCCGACTTGCACCTGCAACTGGAGCAACCGGAGGAGACCGCC
GAATACCTCTGCGCCTGCCACGAGCGCCTGTTGCGTGTCAGCGCCGACCAGAAGCTGCCGCTGGCCCTGCGC
CAGGCGGCCCAGCATCACAGCCGGCGCACCTATGTCGAACTGCTGTCGTTCATCGGCGAACACGGTGCCTAT
CCGCGCACCGAGCGCCTGCTCAAGGGACCGCCGAACGCGGAGGTCCGACCCGAGTTCCTCGCTCCGCCCCCC
TCACTTCGCTATCACTGA
Translation:
MRHWQRTIEQGNRCFVTGALIDAREHYLHALALAQVLLERWGDADEAVMAFVISHHNLADLHLQLEQPEETA
EYLCACHERLLRVSADQKLPLALRQAAQHHSRRTYVELLSFIGEHGAYPRTERLLKGPPNAEVRPEFLAPPP
SLRYH*
AnnotationID:4457GeneID:4451
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 08:08:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4469
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8903




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26045




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4451
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6794
                           PA4469_tr
                           translation of PA4469
                           149
                           99.99
                           99.99
                           0
                           792.0
     

     
     
181957
                           gb|AAG07857.1|AE004860_13
                           (AE004860) hypothetical protein PA4469 [Pseudomonas aeruginosa PAO1]
                           149
                           99.99
                           99.99
                           0
                           792.0
     

     
     
181958
                           gb|AAB17390.1|
                           (U72494) unknown [Pseudomonas aeruginosa]
                           149
                           99.32
                           99.32
                           0
                           788.0
     

     
     
181959
                           gb|AAO57909.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           161
                           59.00
                           65.83
                           20
                           465.0
     

     
     
181961
                           gb|AAD28163.1|AF102270_3
                           (AF102270) 17 kDa hypothetical protein [Pseudomonas putida]
                           157
                           58.59
                           68.15
                           10
                           447.0
     

     






      

          
GC ORFID: 47453How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4469Glimmer Score: 

          
Start: 4425782Stop: 4425333

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4469 translation of PA4469Homolog Bit Score 309.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5515 (ORF: BLASTX 180.0), t_PA4469 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTCATTGGCAACGAACGATCGAACAGGGCAACCGCTGTTTCGTCACCGGCGCATTGATCGATGCGCGT 
GAGCACTACCTCCATGCCCTGGCCCTGGCCCAGGTGCTGCTGGAACGCTGGGGCGACGCCGACGAGGCGGTG 
ATGGCGTTCGTCATTTCCCATCACAACCTGGCCGACTTGCACCTGCAACTGGAGCAACCGGAGGAGACCGCC 
GAATACCTCTGCGCCTGCCACGAGCGCCTGTTGCGTGTCAGCGCCGACCAGAAGCTGCCGCTGGCCCTGCGC 
CAGGCGGCCCAGCATCACAGCCGGCGCACCTATGTCGAACTGCTGTCGTTCATCGGCGAACACGGTGCCTAT 
CCGCGCACCGAGCGCCTGCTCAAGGGACCGCCGAACGCGGAGGTCCGACCCGAGTTCCTCGCTCCGCCCCCC 
TCACTTCGCTATCACTGA