ViewGene
Locus Name:
GeneID:
Location:

GeneID:4450
TrivialName: PA14_26980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26980
PAO1 Ortholog Locus:PA2869
Sequence Length:489
Protein Length:162
Start: 2347729
Stop: 2347241
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06257.1|AE004713_6 (AE004713) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 156/162 (96%), Positives = 156/162 (96%)
Sequence:
ATGCCGTCAATGCGTCAATTAATCGTCTTTTCCTGTTGCCTGGGGCTGCCTCTTGCCCAGGCCGCGGAACCC
GTGCCGCTGGGCGGACGTCCGATCGTCACCCTGCAGCGGTCCGGCGGCGCTCCCGTACGGCTGACCCTGTCC
GACCTCGAAGCCCTGCCCAGCGAGACCCTGGAAGCCCAGCTCCCCGGCGAGGCCAACGCCCGCTGGCAAGGC
GTGCGCCTCAGCCTGTTGCTGCGCCGCCTGGACCTGGCGCCGCCCAAGCGCCTGCGCGTGCTGGCGCTGAAC
GACTACTCGGCGATCATCCCGTACAGCGACCTCGACAGCTACCAGCCCATCCTCGCCTATCGCCGCAACGGC
GCCTACATGGCGATCCGCGAACGCGGACCGCTTTTCATCATCTACCCGATGGCCCGCTATCCTGAGTTGAGA
AACCAGGTCTACTACAACCGTACCGTCTGGCAGGTCAGCTCCATCACTCTTGAGTAA
Translation:
MPSMRQLIVFSCCLGLPLAQAAEPVPLGGRPIVTLQRSGGAPVRLTLSDLEALPSETLEAQLPGEANARWQG
VRLSLLLRRLDLAPPKRLRVLALNDYSAIIPYSDLDSYQPILAYRRNGAYMAIRERGPLFIIYPMARYPELR
NQVYYNRTVWQVSSITLE*
AnnotationID:4456GeneID:4450
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 06:06:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2869
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8901




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26043




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36171




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4450_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4450
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6793
                           PA2869_tr
                           translation of PA2869
                           162
                           96.29
                           96.29
                           0
                           791.0
     

     
     
181956
                           gb|AAG06257.1|AE004713_6
                           (AE004713) hypothetical protein PA2869 [Pseudomonas aeruginosa PAO1]
                           162
                           96.29
                           96.29
                           0
                           791.0
     

     






      

          
GC ORFID: 47452How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2869Glimmer Score: 

          
Start: 2606197Stop: 2606685

          
Length: 489


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2869 translation of PA2869Homolog Bit Score 309.0

          
Other Homologs:  t_PA2869 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGTCAATGCGTCAATTAATCGTCTTTTCCTGTTGCCTGGGGCTGCCTCTTGCCCAGGCCGCGGAACCC 
GTGCCGCTGGGCGGACGTCCGATCGTCACCCTGCAGCGGTCCGGCGGCGCTCCCGTACGGCTGACCCTGTCC 
GACCTCGAAGCCCTGCCCAGCGAGACCCTGGAAGCCCAGCTCCCCGGCGAGGCCAACGCCCGCTGGCAAGGC 
GTGCGCCTCAGCCTGTTGCTGCGCCGCCTGGACCTGGCGCCGCCCAAGCGCCTGCGCGTGCTGGCGCTGAAC 
GACTACTCGGCGATCATCCCGTACAGCGACCTCGACAGCTACCAGCCCATCCTCGCCTATCGCCGCAACGGC 
GCCTACATGGCGATCCGCGAACGCGGACCGCTTTTCATCATCTACCCGATGGCCCGCTATCCTGAGTTGAGA 
AACCAGGTCTACTACAACCGTACCGTCTGGCAGGTCAGCTCCATCACTCTTGAGTAA