ViewGene
Locus Name:
GeneID:
Location:

GeneID:445
TrivialName: PA14_48530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48530
PAO1 Ortholog Locus:PA1221
Sequence Length:1857
Protein Length:618
Start: 4314228
Stop: 4316084
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04610.1|AE004551_14 (AE004551) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 608/618 (98%), Positives = 612/618 (99%)
Sequence:
ATGGACTCATTTTTTCAAAAAAAGGCGATTGCCAGAATGTCCCAGAACTCCCTGCTCGACCTGTACGCGCAC
CCAACGGTGGTGGCCCGCTTCAGCGAAATGGCAGCGCTTCATCCCCATCGCGAAGCCATCAGGGACCGTTTC
GGAAGTGTCGACTATCGGCAACTCCTGCATAGCGCCGAACAACTTTCCGACTATCTTCTCGAGCATTATCCG
CAGCCGGGAGTTTGTCTTGGAGTGTACGGCGAATATTCTCGGGAAAGCATTGTCTGCCTGCTCGCCATACTA
TTATCCGGCCATCACTACTTATATATAGACCTGAAACAACCGGCGGCCTGGAATGCAGAGTTGTGCCGGCAG
GTCGACTGCCGCCTGATCCTCGACTGCTCGACCACGCCGACGCCCGCCAACGGTCTTCCCTGCGTCCCGGTC
AGGCACCTGCCTGCCGCTCCAGCCTCGGTCGCCCGGCCATGCTTCGCGGCGGACCAGATCGCCTACATCAAC
TTCTCCTCGGGCACCACCGGCCGCCCGAAAGCCATCGCCTGCACCCACGCCGGCATTACCCGTCTGTGCCTG
GGCCAGTCGTTCCTCGCGTTCGCTCCGCAGATGCGCTTCCTGGTGAACTCGCCGCTGTCCTTCGATGCGGCG
ACCCTGGAGATCTGGGGCGCGCTGCTCAACGGCGGCTGCTGCGTGCTGAACGACCTCGGCCCCCTCGACCCG
GGCGTGCTGCGCCGGCTGATCGACGAGCGCGGAGCCGACAGCGCCTGGCTCACCGCCTCGCTGTTCAACACC
CTGGTGGACCTCGACCCGGACTGCCTCGGCGGCCTTCGCCAGTTGCTCACCGGCGGCGACATCCTCTCGGTG
CCGCACGTGCGCCGGGCGCTGCTGCGGCATCCGCGACTGCACCTGGTGAATGGCTACGGACCGACGGAGAAC
ACCACCTTCACCTGCTGCCATGTCGTCACCAACGACGACCTCGAGGAAGACGACATCCCCATCGGCAAGGCC
ATCGCCGGCACCGCGGTGCTCCTGCTCGACGAGCACGGACAGGAGATCGCCGAGCCCGACCGGGCCGGGGAG
ATCGTCGCCTTCGGCGCCGGCCTGGCGCAGGGTTATCGGAACGATGCGACGCGCACCCGCGCCAGCTTCGTC
GAGTTGCCCTATCGCGGCCGCCTGCTGCGTGCCTACCGTACCGGCGACCGCGCTCGCTACGACGAGCAGGGT
CGGCTGCGCTTCATCGGCCGCGGCGATGGCCAGGTCAAACTGAACGGCTATCGCCTCGACCTCCCCGCCCTG
GAACAGCGCTTGCGCCGCCAGCCGGGCATCCTCGACTGCGCCCTGCTGGTCCGCAAGCGCAACGGCGTCAAG
CAACTGCTCTGCGCCTGGACGGGAAAAGCCGACGCCAGCCCACAGGCCCTGCTCCGCCAACTGCCCACCTGG
CAGCGCCCGCATGCCTGCGTCCGGGTCGAGGCCTTGCCCTTGACGGCGCACGGCAAGCTGGACCGCGCCGCC
CTGCTGCGCCGCCTGGAAGAACCGCTGGAGCGCTGCGCCAGCGCGCTCGATCCCGACCAACGCGGCTGCGCG
CAGCTGTGGAGCGAATTGCTGGGTTGCGAGGTCGGCGCCGCCGACCAGGATTTCTTCCTCTGCGGCGGCAAC
TCGTTGCTCGCCCTGCAACTGGTCGCCCTCTGTCAATCGGCGGGTGCGGGAGCAAACCTGGGACTCGCCGAC
TTGCAGGCAAACTCGCGCCTCGACCAGTTCAGCCGTCTCCTGCGCAGCCACGGCCTGGCGCCGGAGCGTCTG
CTGGAACGGGCGGCGACGCCGGAGCAGCCGCTGGTGCTGTCGAGGAGCGCGGCATGA
Translation:
MDSFFQKKAIARMSQNSLLDLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLHSAEQLSDYLLEHYP
QPGVCLGVYGEYSRESIVCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPV
RHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSPLSFDAA
TLEIWGALLNGGCCVLNDLGPLDPGVLRRLIDERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDILSV
PHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTNDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGE
IVAFGAGLAQGYRNDATRTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPAL
EQRLRRQPGILDCALLVRKRNGVKQLLCAWTGKADASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAA
LLRRLEEPLERCASALDPDQRGCAQLWSELLGCEVGAADQDFFLCGGNSLLALQLVALCQSAGAGANLGLAD
LQANSRLDQFSRLLRSHGLAPERLLERAATPEQPLVLSRSAA*
AnnotationID:454GeneID:445
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 18:06:48
Gene Name:
Confidence Code:3
GeneProduct:putative AMP-binding enzyme
Cell Localization:()
Synonyms:PA1221
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00501,COG0318
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00501, AMP-binding, AMP-binding enzyme.
CD-Length = 412 residues,  99.5% aligned
Score =  248 bits (633), Expect = 2e-66
Identities = 129/418 (30%), Positives = 186/418 (44%), Gaps = 32/418 (7%)

COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 534 residues,  98.5% aligned
Score =  196 bits (498), Expect = 8e-51
Identities = 124/536 (23%), Positives = 200/536 (37%), Gaps = 50/536 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:893




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18035




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37551




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:445_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:445
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
762
                           PA1221_tr
                           translation of PA1221
                           618
                           98.38
                           99.02
                           0
                           3187.0
     

     
     
33333
                           gb|AAG04610.1|AE004551_14
                           (AE004551) hypothetical protein PA1221 [Pseudomonas aeruginosa PAO1]
                           618
                           98.38
                           99.02
                           0
                           3187.0
     

     






      

          
GC ORFID: 43447How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1221Glimmer Score: 

          
Start: 639680Stop: 637824

          
Length: 1857


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1221 translation of PA1221Homolog Bit Score 1232.0

          
Other Homologs:  t_PA1221 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTCATTTTTTCAAAAAAAGGCGATTGCCAGAATGTCCCAGAACTCCCTGCTCGACCTGTACGCGCAC 
CCAACGGTGGTGGCCCGCTTCAGCGAAATGGCAGCGCTTCATCCCCATCGCGAAGCCATCAGGGACCGTTTC 
GGAAGTGTCGACTATCGGCAACTCCTGCATAGCGCCGAACAACTTTCCGACTATCTTCTCGAGCATTATCCG 
CAGCCGGGAGTTTGTCTTGGAGTGTACGGCGAATATTCTCGGGAAAGCATTGTCTGCCTGCTCGCCATACTA 
TTATCCGGCCATCACTACTTATATATAGACCTGAAACAACCGGCGGCCTGGAATGCAGAGTTGTGCCGGCAG 
GTCGACTGCCGCCTGATCCTCGACTGCTCGACCACGCCGACGCCCGCCAACGGTCTTCCCTGCGTCCCGGTC 
AGGCACCTGCCTGCCGCTCCAGCCTCGGTCGCCCGGCCATGCTTCGCGGCGGACCAGATCGCCTACATCAAC 
TTCTCCTCGGGCACCACCGGCCGCCCGAAAGCCATCGCCTGCACCCACGCCGGCATTACCCGTCTGTGCCTG 
GGCCAGTCGTTCCTCGCGTTCGCTCCGCAGATGCGCTTCCTGGTGAACTCGCCGCTGTCCTTCGATGCGGCG 
ACCCTGGAGATCTGGGGCGCGCTGCTCAACGGCGGCTGCTGCGTGCTGAACGACCTCGGCCCCCTCGACCCG 
GGCGTGCTGCGCCGGCTGATCGACGAGCGCGGAGCCGACAGCGCCTGGCTCACCGCCTCGCTGTTCAACACC 
CTGGTGGACCTCGACCCGGACTGCCTCGGCGGCCTTCGCCAGTTGCTCACCGGCGGCGACATCCTCTCGGTG 
CCGCACGTGCGCCGGGCGCTGCTGCGGCATCCGCGACTGCACCTGGTGAATGGCTACGGACCGACGGAGAAC 
ACCACCTTCACCTGCTGCCATGTCGTCACCAACGACGACCTCGAGGAAGACGACATCCCCATCGGCAAGGCC 
ATCGCCGGCACCGCGGTGCTCCTGCTCGACGAGCACGGACAGGAGATCGCCGAGCCCGACCGGGCCGGGGAG 
ATCGTCGCCTTCGGCGCCGGCCTGGCGCAGGGTTATCGGAACGATGCGACGCGCACCCGCGCCAGCTTCGTC 
GAGTTGCCCTATCGCGGCCGCCTGCTGCGTGCCTACCGTACCGGCGACCGCGCTCGCTACGACGAGCAGGGT 
CGGCTGCGCTTCATCGGCCGCGGCGATGGCCAGGTCAAACTGAACGGCTATCGCCTCGACCTCCCCGCCCTG 
GAACAGCGCTTGCGCCGCCAGCCGGGCATCCTCGACTGCGCCCTGCTGGTCCGCAAGCGCAACGGCGTCAAG 
CAACTGCTCTGCGCCTGGACGGGAAAAGCCGACGCCAGCCCACAGGCCCTGCTCCGCCAACTGCCCACCTGG 
CAGCGCCCGCATGCCTGCGTCCGGGTCGAGGCCTTGCCCTTGACGGCGCACGGCAAGCTGGACCGCGCCGCC 
CTGCTGCGCCGCCTGGAAGAACCGCTGGAGCGCTGCGCCAGCGCGCTCGATCCCGACCAACGCGGCTGCGCG 
CAGCTGTGGAGCGAATTGCTGGGTTGCGAGGTCGGCGCCGCCGACCAGGATTTCTTCCTCTGCGGCGGCAAC 
TCGTTGCTCGCCCTGCAACTGGTCGCCCTCTGTCAATCGGCGGGTGCGGGAGCAAACCTGGGACTCGCCGAC 
TTGCAGGCAAACTCGCGCCTCGACCAGTTCAGCCGTCTCCTGCGCAGCCACGGCCTGGCGCCGGAGCGTCTG 
CTGGAACGGGCGGCGACGCCGGAGCAGCCGCTGGTGCTGTCGAGGAGCGCGGCATGA