ViewGene
Locus Name:
GeneID:
Location:

GeneID:4449
TrivialName: PA14_43140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43140
PAO1 Ortholog Locus:PA1653
Sequence Length:477
Protein Length:158
Start: 3842926
Stop: 3843402
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05042.1|AE004593_4 (AE004593) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 158/158 (100%), Positives = 158/158 (100%)
Sequence:
ATGCCTGACCTGAAAAACCACGCCGTCCAGCAGCAGGCCATGATGGAAGCCTTCTTCTTCGCGTACCAGGCC
TTCACCACCAAGCCTGACGAGATGCTCGCCCGCCGCGGCCTGGGTCGCGTGCACCACCGCGTGCTGTTCTTC
ATCGCCCGCTATCCGGGCCTCAGCGTGAAGGAACTGCTGGCCCTGCTCGGCGTGACCAAGCAGGCGCTGAAC
ATCCCGCTGCGCCAGTTGCTGGAGATGAACCTGATCGGCAGCGCCACCGCCGACGACGACAAGCGCAAACGC
CTCCTCGGCCTCACCGCCGAGGGCGTGCGGTTGGAAAAGGCGCTGCGTCGCGAGCAGTCGCGGCTGCTCCAA
CGCTGCTTCGAGGAAGCCGGCGGCGAAGCGGTCTCCGGCTGGCTGGCGGTCAATCGCACCCTGGCTCGGGCG
CATGCAGGCAGCCGCGGCGAAGCGGCGACGGAGGCCGCCGACTGA
Translation:
MPDLKNHAVQQQAMMEAFFFAYQAFTTKPDEMLARRGLGRVHHRVLFFIARYPGLSVKELLALLGVTKQALN
IPLRQLLEMNLIGSATADDDKRKRLLGLTAEGVRLEKALRREQSRLLQRCFEEAGGEAVSGWLAVNRTLARA
HAGSRGEAATEAAD*
AnnotationID:4455GeneID:4449
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 17:05:37
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, MarR family
Cell Localization:()
Synonyms:PA1653
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00347,COG1846,pfam01047
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP26348.1| (AE017031) transcriptional regulator, MarR family [Bacillus
           anthracis str. Ames]
          Length = 160

 Score =  122 bits (305), Expect = 1e-27
 Identities = 63/138 (45%), Positives = 87/138 (63%)

>gb|AAP09397.1| (AE017005) Transcriptional regulator, MarR family [Bacillus cereus
           ATCC 14579]
          Length = 160

 Score =  121 bits (303), Expect = 2e-27
 Identities = 63/138 (45%), Positives = 86/138 (62%)

>gb|AAK76770.1|AE001438_23 (AE001438) MarR family HTH transcriptional regulator [Clostridium
           acetobutylicum]
          Length = 153

 Score =  107 bits (266), Expect = 3e-23
 Identities = 59/141 (41%), Positives = 85/141 (60%), Gaps = 3/141 (2%)








 
Structural Features:
smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
CD-Length = 101 residues,  94.1% aligned
Score = 56.8 bits (137), Expect = 1e-09
Identities = 29/95 (30%), Positives = 42/95 (44%)

COG1846, MarR, Transcriptional regulators [Transcription]
CD-Length = 126 residues,  77.8% aligned
Score = 52.2 bits (124), Expect = 3e-08

pfam01047, MarR, MarR family. 
CD-Length = 104 residues,  84.6% aligned
Score = 46.3 bits (110), Expect = 2e-06
Identities = 23/88 (26%), Positives = 41/88 (46%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8899




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37190




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4449_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4449
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6792
                           PA1653_tr
                           translation of PA1653
                           158
                           99.99
                           99.99
                           0
                           791.0
     

     
     
181949
                           gb|AAG05042.1|AE004593_4
                           (AE004593) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           158
                           99.99
                           99.99
                           0
                           791.0
     

     
     
181950
                           gb|AAQ61047.1|
                           (AE016922) probable transcriptional regulator, MarR family [Chromobacterium violaceum ATCC 12472]
                           164
                           48.78
                           62.19
                           17
                           392.0
     

     
     
181951
                           gb|AAP26348.1|
                           (AE017031) transcriptional regulator, MarR family [Bacillus anthracis str. Ames]
                           166
                           41.56
                           59.03
                           14
                           305.0
     

     
     
181952
                           gb|AAP09397.1|
                           (AE017005) Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579]
                           166
                           40.96
                           57.83
                           14
                           298.0
     

     






      

          
GC ORFID: 47451How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1653Glimmer Score: 

          
Start: 1110983Stop: 1110507

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1653 translation of PA1653Homolog Bit Score 309.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene564 (ORF: BLASTX 214.0), t_PA1653 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGACCTGAAAAACCACGCCGTCCAGCAGCAGGCCATGATGGAAGCCTTCTTCTTCGCGTACCAGGCC 
TTCACCACCAAGCCTGACGAGATGCTCGCCCGCCGCGGCCTGGGTCGCGTGCACCACCGCGTGCTGTTCTTC 
ATCGCCCGCTATCCGGGCCTCAGCGTGAAGGAACTGCTGGCCCTGCTCGGCGTGACCAAGCAGGCGCTGAAC 
ATCCCGCTGCGCCAGTTGCTGGAGATGAACCTGATCGGCAGCGCCACCGCCGACGACGACAAGCGCAAACGC 
CTCCTCGGCCTCACCGCCGAGGGCGTGCGGTTGGAAAAGGCGCTGCGTCGCGAGCAGTCGCGGCTGCTCCAA 
CGCTGCTTCGAGGAAGCCGGCGGCGAAGCGGTCTCCGGCTGGCTGGCGGTCAATCGCACCCTGGCTCGGGCG 
CATGCAGGCAGCCGCGGCGAAGCGGCGACGGAGGCCGCCGACTGA