ViewGene
Locus Name:
GeneID:
Location:

GeneID:4447
TrivialName: PA14_55290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55290
PAO1 Ortholog Locus:PA0698
Sequence Length:480
Protein Length:159
Start: 4909550
Stop: 4909071
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04087.1|AE004505_8 (AE004505) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/159 (98%), Positives = 158/159 (99%)
Sequence:
ATGAACGACATCACCCTGATCGAACACCTTTCCGTCGACAGCCTGACCGAGGCCTTGCAGGAGGCCGGCTAT
CGGGTCAACCGCAGCGAGCAGAACGGCGTCGTGCAACTGCTCAGCGCCAGCCAGGGAATCGGCTACGCGGTG
CGCTTCGGCAATCCGGCGGCGACGCCGGCGAGCTACCTCGACTTCACCTTCAGCTGCGCCCTGCGCGTGCAG
GGCGAGTTGCCCGCCGGGCTGACCGAGCGCTGGAATCTCAGCCGGCGCTTCGGCCGCCTGTCGCAGCAGGGC
GAGTTCCTGGTGATGGAAATGGACGTGATCGTCGCCGGCGGCGTCAGCCTGGCCAACCTGCGTAGCCATATC
GAACTGTGGGATCGCCTGCTGCAGGAGTTCATCGCCTATCTGCGCGACTACAGCCGCCTGGCCGCGGAGCAG
CAGGGCATGGCGCAGGATGCCGGTCAACCCGTCGATGGCGAGGCCTGA
Translation:
MNDITLIEHLSVDSLTEALQEAGYRVNRSEQNGVVQLLSASQGIGYAVRFGNPAATPASYLDFTFSCALRVQ
GELPAGLTERWNLSRRFGRLSQQGEFLVMEMDVIVAGGVSLANLRSHIELWDRLLQEFIAYLRDYSRLAAEQ
QGMAQDAGQPVDGEA*
AnnotationID:4453GeneID:4447
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 17:05:41
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0698
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8895




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26037




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4447
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6790
                           PA0698_tr
                           translation of PA0698
                           159
                           98.74
                           99.37
                           0
                           793.0
     

     
     
181936
                           gb|AAG04087.1|AE004505_8
                           (AE004505) hypothetical protein PA0698 [Pseudomonas aeruginosa PAO1]
                           159
                           98.74
                           99.37
                           0
                           793.0
     

     
     
181937
                           emb|CAE26800.1|
                           (BX572597) conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
                           172
                           38.37
                           50.00
                           14
                           271.0
     

     






      

          
GC ORFID: 47449How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0698Glimmer Score: 

          
Start: 44357Stop: 44836

          
Length: 480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0698 translation of PA0698Homolog Bit Score 310.0

          
Other Homologs:  t_PA0698 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACATCACCCTGATCGAACACCTTTCCGTCGACAGCCTGACCGAGGCCTTGCAGGAGGCCGGCTAT 
CGGGTCAACCGCAGCGAGCAGAACGGCGTCGTGCAACTGCTCAGCGCCAGCCAGGGAATCGGCTACGCGGTG 
CGCTTCGGCAATCCGGCGGCGACGCCGGCGAGCTACCTCGACTTCACCTTCAGCTGCGCCCTGCGCGTGCAG 
GGCGAGTTGCCCGCCGGGCTGACCGAGCGCTGGAATCTCAGCCGGCGCTTCGGCCGCCTGTCGCAGCAGGGC 
GAGTTCCTGGTGATGGAAATGGACGTGATCGTCGCCGGCGGCGTCAGCCTGGCCAACCTGCGTAGCCATATC 
GAACTGTGGGATCGCCTGCTGCAGGAGTTCATCGCCTATCTGCGCGACTACAGCCGCCTGGCCGCGGAGCAG 
CAGGGCATGGCGCAGGATGCCGGTCAACCCGTCGATGGCGAGGCCTGA