ViewGene

Locus Name:
GeneID:
Location:

GeneID:4446
TrivialName: PA14_07030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07030
PAO1 Ortholog Locus:PA0541
Sequence Length:459
Protein Length:152
Start: 609082
Stop: 609540
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03930.1|AE004490_10 (AE004490) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 152/152 (100%), Positives = 152/152 (100%)
Sequence:
ATGAAGCTGAAGTCCCTGCTCGTCGTGCTGCTGGCCGGCGTCGCCCTGAGCGGCTGTCACCGTATGGATCCC
AATTCGCCCGAGGCCAAGCGCCAGGCGATCTTCAAGGAAATGCTACGGACCAGCGAGGACATGGGCGGGATG
CTCCGCGGACGCCTGCCCTTCGACGCGGAGAAGTTCCGCGCCGGATCGGCGAAGTTGCACCAACTGGCCGAC
CAGCCCTGGCAGTACTTCCCCAGTCCCAAGGCCGGCGAGGAGGGCGAGGACACCCGCGCCAAGGACGAGGTC
TGGCAGCGCCAGCAGGAGTTCAAGGCCGCCACCCAGGTCTTCATCGACGCGATGAACCGTCTCCAGGACAAC
ACTCGCCAGGCCACGCCGACCCCGGATGGCGTGCGCAAGGACTTCGCCGCGGTGGAAGACGCCTGCGAAGCC
TGCCACAAGAAATTCCGCGCGCTCTGA
Translation:
MKLKSLLVVLLAGVALSGCHRMDPNSPEAKRQAIFKEMLRTSEDMGGMLRGRLPFDAEKFRAGSAKLHQLAD
QPWQYFPSPKAGEEGEDTRAKDEVWQRQQEFKAATQVFIDAMNRLQDNTRQATPTPDGVRKDFAAVEDACEA
CHKKFRAL*
AnnotationID:4452GeneID:4446
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:37
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c'
Cell Localization:()
Synonyms:PA0541
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01322
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70537.1|AE016696_2 (AE016792) cytochrome c', putative [Pseudomonas putida KT2440]
          Length = 155

 Score =  137 bits (344), Expect = 3e-32
 Identities = 74/151 (49%), Positives = 93/151 (61%), Gaps = 7/151 (4%)
Structural Features:
pfam01322, Cytochrome C'.
CD-Length = 126 residues,  95.2% aligned
Score = 71.2 bits (174), Expect = 5e-14
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Genomic Context:
Comment:
ReferenceID:8893
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26035
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33848
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4446_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4446

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6789 PA0541_tr translation of PA0541 152 99.99 99.99 0 795.0
181934 gb|AAG03930.1|AE004490_10 (AE004490) hypothetical protein PA0541 [Pseudomonas aeruginosa PAO1] 152 99.99 99.99 0 795.0
181935 gb|AAN70537.1|AE016696_2 (AE016792) cytochrome c', putative [Pseudomonas putida KT2440] 158 46.83 59.49 9 345.0
GC ORFID: 47448How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0541Glimmer Score:
Start: 6410424Stop: 6410882
Length: 459
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0541 translation of PA0541Homolog Bit Score 310.0
Other Homologs: t_PA0541 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGCTGAAGTCCCTGCTCGTCGTGCTGCTGGCCGGCGTCGCCCTGAGCGGCTGTCACCGTATGGATCCC
AATTCGCCCGAGGCCAAGCGCCAGGCGATCTTCAAGGAAATGCTACGGACCAGCGAGGACATGGGCGGGATG
CTCCGCGGACGCCTGCCCTTCGACGCGGAGAAGTTCCGCGCCGGATCGGCGAAGTTGCACCAACTGGCCGAC
CAGCCCTGGCAGTACTTCCCCAGTCCCAAGGCCGGCGAGGAGGGCGAGGACACCCGCGCCAAGGACGAGGTC
TGGCAGCGCCAGCAGGAGTTCAAGGCCGCCACCCAGGTCTTCATCGACGCGATGAACCGTCTCCAGGACAAC
ACTCGCCAGGCCACGCCGACCCCGGATGGCGTGCGCAAGGACTTCGCCGCGGTGGAAGACGCCTGCGAAGCC
TGCCACAAGAAATTCCGCGCGCTCTGA