ViewGene

Locus Name:
GeneID:
Location:

GeneID:4445
TrivialName: PA14_67710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67710
PAO1 Ortholog Locus:PA5127
Sequence Length:462
Protein Length:153
Start: 6048249
Stop: 6048710
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08512.1|AE004926_2 (AE004926) probable rRNA methylase [Pseudomonas aeruginosa PAO1]
Identities = 151/153 (98%), Positives = 151/153 (98%)
Sequence:
ATGTTCCACGTCATCCTGTTTCAACCGGAGATTCCTCCGAATACCGGCAACATTATCAGGCTCTGCGCCAAC
GCCGGATGCAGTCTGCACCTGATCGAGCCGCTCGGTTTCGAACTGGACGACAAGCGCTTGCGCCGTGCCGGC
CTCGACTACCACGAATACGCCAGCGTACGCCGCTACCCGGATCTGCAGAGCTGCCTCGAGGCCCTCGGCCAG
TCACGCCTATTCGCCTTCACCACCAAGGGGTCGCGGGCCTTCCACGAAGTGGCCTACCAGCGCGGCGATGCC
TTCCTCTTCGGCCCGGAAAGCCGCGGACTGCCGGAGGACGTGCGCAACGCCCTGCCAACCGATCGGCGCCTG
CGCCTGCCGATGCGCGAAGGCTGCCGTAGCCTGAACCTGTCCAACACGGTGGCGGTGACCGTCTACGAAGCC
TGGCGCCAGCTCGGCTTCGCCATGGACTGA
Translation:
MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPDLQSCLEALGQ
SRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEA
WRQLGFAMD*
AnnotationID:4451GeneID:4445
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 09:09:42
Gene Name:
Confidence Code:3
GeneProduct:putative RNA methylase
Cell Localization:()
Synonyms:trmH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative tRNA/rRNA methyltransferase
Functional Category Confidence Code:5
COGs:COG0219,pfam00588
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70617.1|AE016704_8 (AE016793) RNA methyltransferase, TrmH family, group 2 [Pseudomonas
           putida KT2440]
          Length = 157

 Score =  258 bits (659), Expect = 8e-69
 Identities = 122/151 (80%), Positives = 135/151 (89%)

>emb|CAC79245.1| (AJ320536) putative RNA methylase [Pseudomonas stutzeri]
          Length = 160

 Score =  248 bits (634), Expect = 6e-66
 Identities = 121/160 (75%), Positives = 134/160 (83%), Gaps = 7/160 (4%)

>emb|CAB85429.1| (AL162758) putative tRNA/rRNA methyltransferase [Neisseria
           meningitidis Z2491]
          Length = 154

 Score =  201 bits (511), Expect = 1e-51
 Identities = 91/151 (60%), Positives = 119/151 (78%)
Structural Features:
COG0219, CspR, Predicted rRNA methylase (SpoU class) 
[Translation, ribosomal structure and biogenesis]
CD-Length = 155 residues,  98.7% aligned
Score =  235 bits (600), Expect = 3e-63
Identities = 99/154 (64%), Positives = 121/154 (78%), Gaps = 2/154 (1%)

pfam00588, SpoU_methylase, SpoU rRNA Methylase family.
CD-Length = 143 residues, 100.0% aligned
Score =  127 bits (321), Expect = 5e-31
Identities = 57/145 (39%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Genomic Context:
Comment:
other possible gene name: yibK
ReferenceID:8891
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26033
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34950
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4445_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4445

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6788 PA5127_tr translation of PA5127 153 98.69 98.69 0 794.0
181834 gb|AAG08512.1|AE004926_2 (AE004926) probable rRNA methylase [Pseudomonas aeruginosa PAO1] 153 98.69 98.69 0 794.0
181836 gb|AAO58749.1| (AE016875) RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae pv. tomato str. DC3000] 153 77.77 88.23 2 651.0
181835 gb|AAN70617.1|AE016704_8 (AE016793) RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida KT2440] 157 77.70 85.98 4 656.0
181837 emb|CAC79245.1| (AJ320536) putative RNA methylase [Pseudomonas stutzeri] 160 75.62 83.75 7 639.0
GC ORFID: 47447How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5127Glimmer Score:
Start: 5311934Stop: 5312395
Length: 462
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5127 translation of PA5127Homolog Bit Score 310.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6927 (ORF: BLASTX 255.0), t_PA5127 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCCACGTCATCCTGTTTCAACCGGAGATTCCTCCGAATACCGGCAACATTATCAGGCTCTGCGCCAAC
GCCGGATGCAGTCTGCACCTGATCGAGCCGCTCGGTTTCGAACTGGACGACAAGCGCTTGCGCCGTGCCGGC
CTCGACTACCACGAATACGCCAGCGTACGCCGCTACCCGGATCTGCAGAGCTGCCTCGAGGCCCTCGGCCAG
TCACGCCTATTCGCCTTCACCACCAAGGGGTCGCGGGCCTTCCACGAAGTGGCCTACCAGCGCGGCGATGCC
TTCCTCTTCGGCCCGGAAAGCCGCGGACTGCCGGAGGACGTGCGCAACGCCCTGCCAACCGATCGGCGCCTG
CGCCTGCCGATGCGCGAAGGCTGCCGTAGCCTGAACCTGTCCAACACGGTGGCGGTGACCGTCTACGAAGCC
TGGCGCCAGCTCGGCTTCGCCATGGACTGA