ViewGene
Locus Name:
GeneID:
Location:

GeneID:4444
TrivialName: PA14_58930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58930
PAO1 Ortholog Locus:
Sequence Length:498
Protein Length:165
Start: 5253182
Stop: 5253679
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84237.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 165/165 (100%), Positives = 165/165 (100%)
Sequence:
ATGAACCTCCAGAACCGCAACAACCTCCTACTGAGCTTGATCGCCGAGACCCAGTTCGACGCCTACGTGCAA
GGCTACATGGCCAAAGCAGGCGCTGCCGCCGGTGCTTCCGAGAATCTGCAAATCGAGGCTGAAGGTGCTGCG
ATGTTGCAGGGCCTGGTCGCTCCGGTTCGCGCTCAGCAGCGTGCCTGTGGACAGTCCCTGCAGAACGCACTG
CTCCAAATCGCCCACGACCTACTGTTGCAGACGAAATCGCAACTGGCCATCGCGGCCAATGCCAGTTCGATC
CAAGTGATCCAGCGGGACATGAACAGGGCGATCTGGAACATAGCTACTGCCATCGATCACCTGGCCGAGTTC
GCCCAACCCTCGCAGGACACTGTGAGGGTCATCGAACGGCTGATGCTCTTCGTCGGCAGCTCATCAAGCACT
GAAGGCCAGCAACTGGCCGCCGAGGCAAATGCGGTGCTCGGCATGAGCGTGGGAGGCCTGGCATGA
Translation:
MNLQNRNNLLLSLIAETQFDAYVQGYMAKAGAAAGASENLQIEAEGAAMLQGLVAPVRAQQRACGQSLQNAL
LQIAHDLLLQTKSQLAIAANASSIQVIQRDMNRAIWNIATAIDHLAEFAQPSQDTVRVIERLMLFVGSSSST
EGQQLAAEANAVLGMSVGGLA*
AnnotationID:4450GeneID:4444
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:49
Gene Name:RL113
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
CP3 (pseudomonas aeruginosa strain C, plasmid pKLC102)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8889




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26031




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4444
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
181832
                           gb|AAP84237.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           165
                           99.99
                           99.99
                           0
                           796.0
     

     
     
6787
                           PA2226_tr
                           translation of PA2226
                           166
                           46.38
                           65.06
                           1
                           344.0
     

     
     
181833
                           gb|AAG05614.1|AE004649_5
                           (AE004649) hypothetical protein PA2226 [Pseudomonas aeruginosa PAO1]
                           166
                           46.38
                           65.06
                           1
                           344.0
     

     






      

          
GC ORFID: 47446How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL113Glimmer Score: 

          
Start: 4516861Stop: 4517358

          
Length: 498


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL113 165 Homolog: PA2226 / Hypothetical protein / P.aeruginosa / PAO1 (AAG05614)) translation of RL113Homolog Bit Score 311.0

          
Other Homologs:  t_PA2226 (ORF: BLASTX 139.0), t_RL113 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTCCAGAACCGCAACAACCTCCTACTGAGCTTGATCGCCGAGACCCAGTTCGACGCCTACGTGCAA 
GGCTACATGGCCAAAGCAGGCGCTGCCGCCGGTGCTTCCGAGAATCTGCAAATCGAGGCTGAAGGTGCTGCG 
ATGTTGCAGGGCCTGGTCGCTCCGGTTCGCGCTCAGCAGCGTGCCTGTGGACAGTCCCTGCAGAACGCACTG 
CTCCAAATCGCCCACGACCTACTGTTGCAGACGAAATCGCAACTGGCCATCGCGGCCAATGCCAGTTCGATC 
CAAGTGATCCAGCGGGACATGAACAGGGCGATCTGGAACATAGCTACTGCCATCGATCACCTGGCCGAGTTC 
GCCCAACCCTCGCAGGACACTGTGAGGGTCATCGAACGGCTGATGCTCTTCGTCGGCAGCTCATCAAGCACT 
GAAGGCCAGCAACTGGCCGCCGAGGCAAATGCGGTGCTCGGCATGAGCGTGGGAGGCCTGGCATGA